Hb_033149_020

Information

Type -
Description -
Location Contig33149: 5775-8120
Sequence    

Annotation

kegg
ID egr:104434660
description putative disease resistance protein RGA4
nr
ID KDP37632.1
description hypothetical protein JCGZ_07831 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KNB2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07831 PE=4 SV=1
Gene Ontology
ID GO:0005515
description disease resistance protein rga4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033149_020 0.0 - - hypothetical protein JCGZ_07831 [Jatropha curcas]
2 Hb_000610_060 0.1027322137 - - PREDICTED: CO(2)-response secreted protease-like [Jatropha curcas]
3 Hb_181824_010 0.1057443529 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
4 Hb_000451_040 0.1324675127 - - conserved hypothetical protein [Ricinus communis]
5 Hb_008380_010 0.1403903556 - - PREDICTED: PRA1 family protein B4-like [Camelina sativa]
6 Hb_000045_140 0.1430026315 - - PREDICTED: nematode resistance protein-like HSPRO2 [Jatropha curcas]
7 Hb_056012_010 0.1442218308 - - PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
8 Hb_098160_010 0.1461543362 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
9 Hb_102100_010 0.1498177276 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
10 Hb_011689_100 0.1509237401 - - PREDICTED: uncharacterized protein LOC105631864 [Jatropha curcas]
11 Hb_007951_120 0.1527277453 - - PREDICTED: uncharacterized protein At1g15400 [Populus euphratica]
12 Hb_000803_060 0.1535557587 - - poly(p)/ATP NAD kinase, putative [Ricinus communis]
13 Hb_000363_110 0.1543264551 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 21 [Jatropha curcas]
14 Hb_007120_010 0.1548015267 - - PREDICTED: uncharacterized protein LOC105634737 [Jatropha curcas]
15 Hb_011360_090 0.1548283136 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
16 Hb_010589_130 0.1554954302 - - PREDICTED: uncharacterized protein LOC104884346 [Beta vulgaris subsp. vulgaris]
17 Hb_007574_050 0.1589763248 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
18 Hb_000532_030 0.1592546624 - - PREDICTED: oxalate--CoA ligase-like [Jatropha curcas]
19 Hb_185080_010 0.1593678523 - - -
20 Hb_000103_400 0.1599329901 - - PREDICTED: ATP sulfurylase 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_033149_020 Hb_033149_020 Hb_000610_060 Hb_000610_060 Hb_033149_020--Hb_000610_060 Hb_181824_010 Hb_181824_010 Hb_033149_020--Hb_181824_010 Hb_000451_040 Hb_000451_040 Hb_033149_020--Hb_000451_040 Hb_008380_010 Hb_008380_010 Hb_033149_020--Hb_008380_010 Hb_000045_140 Hb_000045_140 Hb_033149_020--Hb_000045_140 Hb_056012_010 Hb_056012_010 Hb_033149_020--Hb_056012_010 Hb_007574_050 Hb_007574_050 Hb_000610_060--Hb_007574_050 Hb_008103_100 Hb_008103_100 Hb_000610_060--Hb_008103_100 Hb_004712_160 Hb_004712_160 Hb_000610_060--Hb_004712_160 Hb_011689_100 Hb_011689_100 Hb_000610_060--Hb_011689_100 Hb_001053_200 Hb_001053_200 Hb_000610_060--Hb_001053_200 Hb_005568_060 Hb_005568_060 Hb_181824_010--Hb_005568_060 Hb_001846_040 Hb_001846_040 Hb_181824_010--Hb_001846_040 Hb_181824_010--Hb_000045_140 Hb_016404_010 Hb_016404_010 Hb_181824_010--Hb_016404_010 Hb_138628_010 Hb_138628_010 Hb_181824_010--Hb_138628_010 Hb_000984_290 Hb_000984_290 Hb_000451_040--Hb_000984_290 Hb_061908_030 Hb_061908_030 Hb_000451_040--Hb_061908_030 Hb_010126_030 Hb_010126_030 Hb_000451_040--Hb_010126_030 Hb_001989_060 Hb_001989_060 Hb_000451_040--Hb_001989_060 Hb_004586_130 Hb_004586_130 Hb_000451_040--Hb_004586_130 Hb_001898_010 Hb_001898_010 Hb_000451_040--Hb_001898_010 Hb_098160_010 Hb_098160_010 Hb_008380_010--Hb_098160_010 Hb_006414_020 Hb_006414_020 Hb_008380_010--Hb_006414_020 Hb_008380_010--Hb_001898_010 Hb_000103_400 Hb_000103_400 Hb_008380_010--Hb_000103_400 Hb_008380_010--Hb_181824_010 Hb_000532_030 Hb_000532_030 Hb_000045_140--Hb_000532_030 Hb_000283_100 Hb_000283_100 Hb_000045_140--Hb_000283_100 Hb_000045_140--Hb_010126_030 Hb_000045_140--Hb_001989_060 Hb_007120_010 Hb_007120_010 Hb_000045_140--Hb_007120_010 Hb_000803_060 Hb_000803_060 Hb_056012_010--Hb_000803_060 Hb_102100_010 Hb_102100_010 Hb_056012_010--Hb_102100_010 Hb_000220_090 Hb_000220_090 Hb_056012_010--Hb_000220_090 Hb_001258_150 Hb_001258_150 Hb_056012_010--Hb_001258_150 Hb_185513_010 Hb_185513_010 Hb_056012_010--Hb_185513_010 Hb_001662_170 Hb_001662_170 Hb_056012_010--Hb_001662_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.26734 15.9526 5.84345 3.68576 0.730501 0.473698
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.145687 0.343329 0.191838 1.86464 0.634519

CAGE analysis