Hb_033152_100

Information

Type -
Description -
Location Contig33152: 85616-88712
Sequence    

Annotation

kegg
ID rcu:RCOM_0774040
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002521838.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q9XIL5
description Pentatricopeptide repeat-containing protein At2g15820 OS=Arabidopsis thaliana GN=At2g15820 PE=2 SV=3
trembl
ID B9S769
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0774040 PE=4 SV=1
Gene Ontology
ID GO:0009507
description pentatricopeptide repeat-containing protein at2g15820

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033152_100 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_004116_180 0.1113244072 - - PREDICTED: uncharacterized protein LOC105646147 [Jatropha curcas]
3 Hb_000614_150 0.1164662985 - - PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like [Jatropha curcas]
4 Hb_000367_020 0.1209316944 - - PREDICTED: uncharacterized protein LOC105640608 [Jatropha curcas]
5 Hb_010180_060 0.1250469732 - - PREDICTED: uncharacterized protein LOC105648049 [Jatropha curcas]
6 Hb_001951_100 0.1318233149 - - Calcium-activated outward-rectifying potassium channel, putative [Ricinus communis]
7 Hb_008686_020 0.1349140174 - - PREDICTED: uncharacterized protein LOC105632277 isoform X1 [Jatropha curcas]
8 Hb_001673_060 0.1358073776 - - PREDICTED: uncharacterized protein LOC105635789 [Jatropha curcas]
9 Hb_000856_020 0.1398082459 - - PREDICTED: probable beta-1,3-galactosyltransferase 19 [Jatropha curcas]
10 Hb_015183_080 0.1405815233 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
11 Hb_000928_090 0.1417729825 - - PREDICTED: septin and tuftelin-interacting protein 1 homolog 1 [Jatropha curcas]
12 Hb_002521_020 0.1419779012 - - PREDICTED: pentatricopeptide repeat-containing protein At1g03100, mitochondrial-like isoform X2 [Jatropha curcas]
13 Hb_000434_070 0.1423641429 - - PREDICTED: uncharacterized transmembrane protein DDB_G0289901 [Jatropha curcas]
14 Hb_000492_080 0.1429904681 - - PREDICTED: probable sucrose-phosphate synthase 1 [Jatropha curcas]
15 Hb_000059_230 0.1430158651 - - PREDICTED: uncharacterized protein LOC105648049 [Jatropha curcas]
16 Hb_000445_130 0.1432454569 transcription factor TF Family: C3H hypothetical protein JCGZ_12159 [Jatropha curcas]
17 Hb_001998_150 0.14616467 - - hypothetical protein JCGZ_09140 [Jatropha curcas]
18 Hb_007575_080 0.1464814755 - - PREDICTED: lysine-specific histone demethylase 1 homolog 3 [Jatropha curcas]
19 Hb_000065_090 0.1467004819 - - potassium channel tetramerization domain-containing protein, putative [Ricinus communis]
20 Hb_000340_080 0.1471081683 - - PREDICTED: isoamylase 2, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_033152_100 Hb_033152_100 Hb_004116_180 Hb_004116_180 Hb_033152_100--Hb_004116_180 Hb_000614_150 Hb_000614_150 Hb_033152_100--Hb_000614_150 Hb_000367_020 Hb_000367_020 Hb_033152_100--Hb_000367_020 Hb_010180_060 Hb_010180_060 Hb_033152_100--Hb_010180_060 Hb_001951_100 Hb_001951_100 Hb_033152_100--Hb_001951_100 Hb_008686_020 Hb_008686_020 Hb_033152_100--Hb_008686_020 Hb_000579_030 Hb_000579_030 Hb_004116_180--Hb_000579_030 Hb_001673_060 Hb_001673_060 Hb_004116_180--Hb_001673_060 Hb_001226_110 Hb_001226_110 Hb_004116_180--Hb_001226_110 Hb_000920_290 Hb_000920_290 Hb_004116_180--Hb_000920_290 Hb_000340_080 Hb_000340_080 Hb_004116_180--Hb_000340_080 Hb_003849_280 Hb_003849_280 Hb_000614_150--Hb_003849_280 Hb_000434_070 Hb_000434_070 Hb_000614_150--Hb_000434_070 Hb_000538_280 Hb_000538_280 Hb_000614_150--Hb_000538_280 Hb_000196_060 Hb_000196_060 Hb_000614_150--Hb_000196_060 Hb_001124_050 Hb_001124_050 Hb_000614_150--Hb_001124_050 Hb_001377_100 Hb_001377_100 Hb_000614_150--Hb_001377_100 Hb_021596_010 Hb_021596_010 Hb_000367_020--Hb_021596_010 Hb_000367_020--Hb_001951_100 Hb_000367_020--Hb_008686_020 Hb_005649_080 Hb_005649_080 Hb_000367_020--Hb_005649_080 Hb_000154_130 Hb_000154_130 Hb_000367_020--Hb_000154_130 Hb_001054_120 Hb_001054_120 Hb_000367_020--Hb_001054_120 Hb_002521_020 Hb_002521_020 Hb_010180_060--Hb_002521_020 Hb_008053_040 Hb_008053_040 Hb_010180_060--Hb_008053_040 Hb_006839_010 Hb_006839_010 Hb_010180_060--Hb_006839_010 Hb_005488_170 Hb_005488_170 Hb_010180_060--Hb_005488_170 Hb_000059_230 Hb_000059_230 Hb_010180_060--Hb_000059_230 Hb_003805_040 Hb_003805_040 Hb_010180_060--Hb_003805_040 Hb_001951_100--Hb_008686_020 Hb_004696_070 Hb_004696_070 Hb_001951_100--Hb_004696_070 Hb_012490_010 Hb_012490_010 Hb_001951_100--Hb_012490_010 Hb_000445_130 Hb_000445_130 Hb_001951_100--Hb_000445_130 Hb_000340_360 Hb_000340_360 Hb_001951_100--Hb_000340_360 Hb_002918_320 Hb_002918_320 Hb_008686_020--Hb_002918_320 Hb_008686_020--Hb_012490_010 Hb_002928_190 Hb_002928_190 Hb_008686_020--Hb_002928_190 Hb_004551_020 Hb_004551_020 Hb_008686_020--Hb_004551_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.92476 7.42437 1.16093 5.04181 2.29973 2.18762
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.10493 1.20971 1.70865 1.96031 6.54839

CAGE analysis