Hb_033152_110

Information

Type transcription factor
Description TF Family: G2-like
Location Contig33152: 96656-99425
Sequence    

Annotation

kegg
ID rcu:RCOM_0774170
description hypothetical protein
nr
ID XP_012072452.1
description PREDICTED: probable transcription factor KAN3 [Jatropha curcas]
swissprot
ID Q9LTH4
description Transcription factor BOA OS=Arabidopsis thaliana GN=BOA PE=2 SV=1
trembl
ID A0A067L2E9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04882 PE=4 SV=1
Gene Ontology
ID GO:0003677
description two-component response regulator-like aprr2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34861: 97887-99177
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033152_110 0.0 transcription factor TF Family: G2-like PREDICTED: probable transcription factor KAN3 [Jatropha curcas]
2 Hb_000115_360 0.0859902406 - - PREDICTED: probable protein phosphatase 2C 15 isoform X3 [Jatropha curcas]
3 Hb_003226_200 0.0970537434 - - magnesium/proton exchanger, putative [Ricinus communis]
4 Hb_000622_060 0.1007210949 - - PREDICTED: uncharacterized protein At5g05190-like isoform X1 [Jatropha curcas]
5 Hb_000130_200 0.1010426222 - - PREDICTED: putative serine/threonine-protein kinase isoform X3 [Jatropha curcas]
6 Hb_001754_120 0.1030046197 - - PREDICTED: probable protein phosphatase 2C 40 [Jatropha curcas]
7 Hb_000046_480 0.1032597777 - - PREDICTED: acyl-CoA-binding domain-containing protein 5 [Jatropha curcas]
8 Hb_000032_600 0.1095278879 - - PREDICTED: B2 protein [Jatropha curcas]
9 Hb_005731_100 0.1177273241 - - monovalent cation:proton antiporter, putative [Ricinus communis]
10 Hb_000070_110 0.1221346793 - - PREDICTED: uncharacterized protein LOC105645744 isoform X1 [Jatropha curcas]
11 Hb_000054_030 0.1238332296 - - hypothetical protein POPTR_0010s17680g [Populus trichocarpa]
12 Hb_067664_010 0.1250710686 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
13 Hb_000979_260 0.1264955753 - - ARF GTPase activator, putative [Ricinus communis]
14 Hb_002759_220 0.1287716155 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
15 Hb_001153_100 0.1306629435 transcription factor TF Family: HB PREDICTED: homeobox protein HD1 [Jatropha curcas]
16 Hb_003053_070 0.1346701498 - - PREDICTED: phosphoglucan phosphatase LSF1, chloroplastic [Jatropha curcas]
17 Hb_001124_140 0.1353354193 - - PREDICTED: inactive beta-amylase 9 [Jatropha curcas]
18 Hb_003783_050 0.1358873956 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000210_080 0.1385277753 - - PREDICTED: 2-Cys peroxiredoxin BAS1, chloroplastic-like [Jatropha curcas]
20 Hb_002397_050 0.1393998049 - - PREDICTED: ACT domain-containing protein ACR4 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_033152_110 Hb_033152_110 Hb_000115_360 Hb_000115_360 Hb_033152_110--Hb_000115_360 Hb_003226_200 Hb_003226_200 Hb_033152_110--Hb_003226_200 Hb_000622_060 Hb_000622_060 Hb_033152_110--Hb_000622_060 Hb_000130_200 Hb_000130_200 Hb_033152_110--Hb_000130_200 Hb_001754_120 Hb_001754_120 Hb_033152_110--Hb_001754_120 Hb_000046_480 Hb_000046_480 Hb_033152_110--Hb_000046_480 Hb_000115_360--Hb_000622_060 Hb_002391_320 Hb_002391_320 Hb_000115_360--Hb_002391_320 Hb_000115_360--Hb_003226_200 Hb_004129_010 Hb_004129_010 Hb_000115_360--Hb_004129_010 Hb_112064_010 Hb_112064_010 Hb_000115_360--Hb_112064_010 Hb_003226_200--Hb_000622_060 Hb_000979_260 Hb_000979_260 Hb_003226_200--Hb_000979_260 Hb_002759_220 Hb_002759_220 Hb_003226_200--Hb_002759_220 Hb_000008_060 Hb_000008_060 Hb_003226_200--Hb_000008_060 Hb_000622_060--Hb_000130_200 Hb_000032_600 Hb_000032_600 Hb_000622_060--Hb_000032_600 Hb_000622_060--Hb_004129_010 Hb_000070_110 Hb_000070_110 Hb_000130_200--Hb_000070_110 Hb_178968_080 Hb_178968_080 Hb_000130_200--Hb_178968_080 Hb_000130_200--Hb_000032_600 Hb_002529_090 Hb_002529_090 Hb_000130_200--Hb_002529_090 Hb_001754_120--Hb_000032_600 Hb_001754_120--Hb_000979_260 Hb_005731_100 Hb_005731_100 Hb_001754_120--Hb_005731_100 Hb_001754_120--Hb_000622_060 Hb_001124_140 Hb_001124_140 Hb_001754_120--Hb_001124_140 Hb_000046_480--Hb_005731_100 Hb_000414_080 Hb_000414_080 Hb_000046_480--Hb_000414_080 Hb_000046_480--Hb_001124_140 Hb_006736_050 Hb_006736_050 Hb_000046_480--Hb_006736_050 Hb_001433_150 Hb_001433_150 Hb_000046_480--Hb_001433_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.896924 3.26968 8.3921 9.18985 0.340045 0.20252
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.04979 1.69989 2.13721 5.49909 13.8259

CAGE analysis