Hb_033152_120

Information

Type -
Description -
Location Contig33152: 102934-106381
Sequence    

Annotation

kegg
ID rcu:RCOM_0774180
description lupus la ribonucleoprotein, putative
nr
ID XP_012072450.1
description PREDICTED: la-related protein 6C [Jatropha curcas]
swissprot
ID Q9LHL3
description La-related protein 6C OS=Arabidopsis thaliana GN=LARP6C PE=3 SV=1
trembl
ID A0A067KTH8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04881 PE=4 SV=1
Gene Ontology
ID GO:0005634
description la-related protein 6c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34863: 104999-105322 , PASA_asmbl_34864: 106165-106469
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033152_120 0.0 - - PREDICTED: la-related protein 6C [Jatropha curcas]
2 Hb_007441_080 0.1583047518 - - PREDICTED: ELMO domain-containing protein C-like [Jatropha curcas]
3 Hb_006889_020 0.1660118315 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
4 Hb_001904_050 0.1714326278 - - alpha-tubulin 1 [Hevea brasiliensis]
5 Hb_000256_080 0.1718652182 - - PREDICTED: deSI-like protein At4g17486 [Jatropha curcas]
6 Hb_002007_320 0.1721741914 - - PREDICTED: mitogen-activated protein kinase kinase kinase ANP1 [Jatropha curcas]
7 Hb_003549_080 0.1724478309 - - PREDICTED: importin subunit alpha-4 isoform X2 [Jatropha curcas]
8 Hb_001998_200 0.1734874064 - - UDP-glucose 4-epimerase, putative [Ricinus communis]
9 Hb_065525_120 0.1757819633 - - dtdp-glucose 4-6-dehydratase, putative [Ricinus communis]
10 Hb_000477_040 0.1766626029 - - conserved hypothetical protein [Ricinus communis]
11 Hb_154038_020 0.1768715708 - - hypothetical protein JCGZ_05648 [Jatropha curcas]
12 Hb_003602_060 0.182970155 - - PREDICTED: phosphoglycerate mutase-like protein 1 [Jatropha curcas]
13 Hb_025466_020 0.1857035435 - - tubulin beta-6 [Brassica oleracea var. italica]
14 Hb_000935_040 0.1863557111 - - Uncharacterized protein isoform 2 [Theobroma cacao]
15 Hb_000291_290 0.1885846592 - - conserved hypothetical protein [Ricinus communis]
16 Hb_133799_010 0.1890376174 - - conserved hypothetical protein [Ricinus communis]
17 Hb_007110_010 0.1911705973 - - PREDICTED: accessory gland protein Acp36DE [Jatropha curcas]
18 Hb_001369_630 0.1925351908 - - PREDICTED: UDP-glucuronate 4-epimerase 3-like [Jatropha curcas]
19 Hb_048476_060 0.1941278812 - - PREDICTED: CRAL-TRIO domain-containing protein YKL091C-like isoform X2 [Jatropha curcas]
20 Hb_007101_110 0.1943988926 - - PREDICTED: nucleobase-ascorbate transporter 7 [Jatropha curcas]

Gene co-expression network

sample Hb_033152_120 Hb_033152_120 Hb_007441_080 Hb_007441_080 Hb_033152_120--Hb_007441_080 Hb_006889_020 Hb_006889_020 Hb_033152_120--Hb_006889_020 Hb_001904_050 Hb_001904_050 Hb_033152_120--Hb_001904_050 Hb_000256_080 Hb_000256_080 Hb_033152_120--Hb_000256_080 Hb_002007_320 Hb_002007_320 Hb_033152_120--Hb_002007_320 Hb_003549_080 Hb_003549_080 Hb_033152_120--Hb_003549_080 Hb_002110_100 Hb_002110_100 Hb_007441_080--Hb_002110_100 Hb_000742_020 Hb_000742_020 Hb_007441_080--Hb_000742_020 Hb_000684_030 Hb_000684_030 Hb_007441_080--Hb_000684_030 Hb_003602_060 Hb_003602_060 Hb_007441_080--Hb_003602_060 Hb_000590_120 Hb_000590_120 Hb_007441_080--Hb_000590_120 Hb_003875_030 Hb_003875_030 Hb_007441_080--Hb_003875_030 Hb_006445_020 Hb_006445_020 Hb_006889_020--Hb_006445_020 Hb_001377_530 Hb_001377_530 Hb_006889_020--Hb_001377_530 Hb_012804_020 Hb_012804_020 Hb_006889_020--Hb_012804_020 Hb_000189_170 Hb_000189_170 Hb_006889_020--Hb_000189_170 Hb_001408_170 Hb_001408_170 Hb_006889_020--Hb_001408_170 Hb_031527_110 Hb_031527_110 Hb_001904_050--Hb_031527_110 Hb_006711_090 Hb_006711_090 Hb_001904_050--Hb_006711_090 Hb_001904_050--Hb_000742_020 Hb_154038_020 Hb_154038_020 Hb_001904_050--Hb_154038_020 Hb_001904_050--Hb_007441_080 Hb_000181_350 Hb_000181_350 Hb_001904_050--Hb_000181_350 Hb_000962_070 Hb_000962_070 Hb_000256_080--Hb_000962_070 Hb_001864_080 Hb_001864_080 Hb_000256_080--Hb_001864_080 Hb_000291_290 Hb_000291_290 Hb_000256_080--Hb_000291_290 Hb_000796_150 Hb_000796_150 Hb_000256_080--Hb_000796_150 Hb_007044_090 Hb_007044_090 Hb_000256_080--Hb_007044_090 Hb_006925_050 Hb_006925_050 Hb_000256_080--Hb_006925_050 Hb_002193_060 Hb_002193_060 Hb_002007_320--Hb_002193_060 Hb_003371_070 Hb_003371_070 Hb_002007_320--Hb_003371_070 Hb_000375_300 Hb_000375_300 Hb_002007_320--Hb_000375_300 Hb_000935_040 Hb_000935_040 Hb_002007_320--Hb_000935_040 Hb_000012_080 Hb_000012_080 Hb_002007_320--Hb_000012_080 Hb_000023_310 Hb_000023_310 Hb_002007_320--Hb_000023_310 Hb_003549_080--Hb_007441_080 Hb_004965_110 Hb_004965_110 Hb_003549_080--Hb_004965_110 Hb_003549_080--Hb_001904_050 Hb_011671_260 Hb_011671_260 Hb_003549_080--Hb_011671_260 Hb_027506_040 Hb_027506_040 Hb_003549_080--Hb_027506_040 Hb_009111_020 Hb_009111_020 Hb_003549_080--Hb_009111_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.112676 0.147043 0.646067 0.866409 0.0613688 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.40398 0.260015 0.323779 0.115562 0.480451

CAGE analysis