Hb_033153_050

Information

Type transcription factor
Description TF Family: VOZ
Location Contig33153: 40675-44301
Sequence    

Annotation

kegg
ID rcu:RCOM_1012180
description hypothetical protein
nr
ID XP_002522505.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SGQ0
description Transcription factor VOZ1 OS=Arabidopsis thaliana GN=VOZ1 PE=1 SV=1
trembl
ID B9S936
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1012180 PE=4 SV=1
Gene Ontology
ID GO:0043565
description transcription factor voz1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34869: 40168-44254 , PASA_asmbl_34870: 40140-44269
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033153_050 0.0 transcription factor TF Family: VOZ conserved hypothetical protein [Ricinus communis]
2 Hb_001862_190 0.0583376852 - - PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1 isoform X2 [Jatropha curcas]
3 Hb_005306_110 0.0594164479 - - casein kinase, putative [Ricinus communis]
4 Hb_007894_140 0.0616496683 - - PREDICTED: polyadenylate-binding protein-interacting protein 4 [Jatropha curcas]
5 Hb_001635_170 0.0626502282 - - hypothetical protein JCGZ_24811 [Jatropha curcas]
6 Hb_029920_050 0.0686583853 - - PREDICTED: putative HVA22-like protein g [Jatropha curcas]
7 Hb_033843_010 0.0727450559 - - PREDICTED: cell division control protein 2 homolog A isoform X1 [Jatropha curcas]
8 Hb_008803_090 0.0731996123 - - PREDICTED: COP9 signalosome complex subunit 6a [Jatropha curcas]
9 Hb_007477_080 0.0747198069 - - conserved hypothetical protein [Ricinus communis]
10 Hb_007336_020 0.0752919864 - - Mannose-P-dolichol utilization defect 1 protein, putative [Ricinus communis]
11 Hb_002685_140 0.0786805127 - - PREDICTED: membrin-11 [Jatropha curcas]
12 Hb_005662_030 0.079289024 - - protein with unknown function [Ricinus communis]
13 Hb_000327_120 0.0804549246 - - FGFR1 oncogene partner, putative [Ricinus communis]
14 Hb_000139_410 0.0806494542 transcription factor TF Family: NF-YC hypothetical protein POPTR_0010s03730g [Populus trichocarpa]
15 Hb_006922_100 0.0811431526 - - PREDICTED: uncharacterized protein LOC105645470 isoform X1 [Jatropha curcas]
16 Hb_000645_050 0.0815215539 - - peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein [Populus trichocarpa]
17 Hb_007590_080 0.0829860854 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP19-4 [Malus domestica]
18 Hb_000020_190 0.0830021431 - - hypothetical protein RCOM_0452240 [Ricinus communis]
19 Hb_000134_090 0.0835961011 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial [Jatropha curcas]
20 Hb_000620_010 0.0853272787 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_033153_050 Hb_033153_050 Hb_001862_190 Hb_001862_190 Hb_033153_050--Hb_001862_190 Hb_005306_110 Hb_005306_110 Hb_033153_050--Hb_005306_110 Hb_007894_140 Hb_007894_140 Hb_033153_050--Hb_007894_140 Hb_001635_170 Hb_001635_170 Hb_033153_050--Hb_001635_170 Hb_029920_050 Hb_029920_050 Hb_033153_050--Hb_029920_050 Hb_033843_010 Hb_033843_010 Hb_033153_050--Hb_033843_010 Hb_000134_090 Hb_000134_090 Hb_001862_190--Hb_000134_090 Hb_006922_100 Hb_006922_100 Hb_001862_190--Hb_006922_100 Hb_001322_190 Hb_001322_190 Hb_001862_190--Hb_001322_190 Hb_005662_030 Hb_005662_030 Hb_001862_190--Hb_005662_030 Hb_007477_080 Hb_007477_080 Hb_001862_190--Hb_007477_080 Hb_001584_330 Hb_001584_330 Hb_005306_110--Hb_001584_330 Hb_001623_420 Hb_001623_420 Hb_005306_110--Hb_001623_420 Hb_000943_070 Hb_000943_070 Hb_005306_110--Hb_000943_070 Hb_000120_950 Hb_000120_950 Hb_005306_110--Hb_000120_950 Hb_003642_060 Hb_003642_060 Hb_005306_110--Hb_003642_060 Hb_007590_080 Hb_007590_080 Hb_007894_140--Hb_007590_080 Hb_007218_080 Hb_007218_080 Hb_007894_140--Hb_007218_080 Hb_007894_140--Hb_001862_190 Hb_006663_100 Hb_006663_100 Hb_007894_140--Hb_006663_100 Hb_007336_020 Hb_007336_020 Hb_007894_140--Hb_007336_020 Hb_000327_120 Hb_000327_120 Hb_001635_170--Hb_000327_120 Hb_010661_030 Hb_010661_030 Hb_001635_170--Hb_010661_030 Hb_008803_090 Hb_008803_090 Hb_001635_170--Hb_008803_090 Hb_000661_250 Hb_000661_250 Hb_001635_170--Hb_000661_250 Hb_022250_030 Hb_022250_030 Hb_001635_170--Hb_022250_030 Hb_029920_050--Hb_001635_170 Hb_029920_050--Hb_008803_090 Hb_029920_050--Hb_007336_020 Hb_000230_200 Hb_000230_200 Hb_029920_050--Hb_000230_200 Hb_029920_050--Hb_033843_010 Hb_000465_430 Hb_000465_430 Hb_033843_010--Hb_000465_430 Hb_003502_080 Hb_003502_080 Hb_033843_010--Hb_003502_080 Hb_003058_130 Hb_003058_130 Hb_033843_010--Hb_003058_130 Hb_001006_170 Hb_001006_170 Hb_033843_010--Hb_001006_170 Hb_003392_040 Hb_003392_040 Hb_033843_010--Hb_003392_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
95.4175 34.1583 29.4854 29.643 57.3856 68.494
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
74.1507 45.2813 53.1996 26.2719 19.071

CAGE analysis