Hb_033153_060

Information

Type -
Description -
Location Contig33153: 45097-47380
Sequence    

Annotation

kegg
ID rcu:RCOM_1012190
description Transcription elongation factor, putative
nr
ID XP_002522506.1
description Transcription elongation factor, putative [Ricinus communis]
swissprot
ID Q8LHP0
description Transcription elongation factor 1 homolog OS=Oryza sativa subsp. japonica GN=Os07g0631100 PE=3 SV=1
trembl
ID B9S937
description Transcription elongation factor, putative OS=Ricinus communis GN=RCOM_1012190 PE=4 SV=1
Gene Ontology
ID GO:0003746
description transcription elongation factor 1 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34874: 45156-47206 , PASA_asmbl_34875: 45517-45722
cDNA
(Sanger)
(ID:Location)		 001_K15.ab1: 45177-47202 , 010_O01.ab1: 45156-47204 , 050_N12.ab1: 45156-47206

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033153_060 0.0 - - Transcription elongation factor, putative [Ricinus communis]
2 Hb_004459_040 0.0551024328 - - PREDICTED: uncharacterized protein LOC105649649 [Jatropha curcas]
3 Hb_006541_010 0.0597047557 - - PREDICTED: uncharacterized protein LOC105637261 isoform X1 [Jatropha curcas]
4 Hb_007576_170 0.0643764071 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000042_200 0.0767733041 - - PREDICTED: uncharacterized protein LOC100252136 isoform X1 [Vitis vinifera]
6 Hb_007065_010 0.0788063217 - - hypothetical protein Csa_3G379730 [Cucumis sativus]
7 Hb_000789_230 0.0792927012 - - PREDICTED: AP-4 complex subunit sigma [Jatropha curcas]
8 Hb_002918_290 0.0796725855 - - PREDICTED: uncharacterized protein LOC105649583 isoform X1 [Jatropha curcas]
9 Hb_005463_140 0.0813916846 - - PREDICTED: histone deacetylase complex subunit SAP18 [Jatropha curcas]
10 Hb_002798_020 0.0820830327 - - PREDICTED: uncharacterized protein LOC105647735 [Jatropha curcas]
11 Hb_000431_070 0.0831685368 - - Mitochondrial import receptor subunit TOM20, putative [Ricinus communis]
12 Hb_000680_140 0.0838048589 - - PREDICTED: uncharacterized protein LOC105631472 isoform X1 [Jatropha curcas]
13 Hb_002000_140 0.0852065418 - - PREDICTED: thioredoxin Y2, chloroplastic [Jatropha curcas]
14 Hb_004127_020 0.0856944017 - - PREDICTED: probable RNA 3'-terminal phosphate cyclase-like protein isoform X1 [Populus euphratica]
15 Hb_000224_140 0.0858877463 - - ribonuclease z, chloroplast, putative [Ricinus communis]
16 Hb_017491_060 0.0867328543 - - PREDICTED: probable complex I intermediate-associated protein 30 isoform X2 [Jatropha curcas]
17 Hb_002687_170 0.0870328449 - - PREDICTED: G patch domain and ankyrin repeat-containing protein 1 homolog [Jatropha curcas]
18 Hb_001512_080 0.0874990762 - - PREDICTED: proteasome subunit beta type-7-B [Jatropha curcas]
19 Hb_002016_120 0.087620588 - - PREDICTED: uncharacterized protein OsI_027940 [Jatropha curcas]
20 Hb_017413_010 0.0878368249 - - -

Gene co-expression network

sample Hb_033153_060 Hb_033153_060 Hb_004459_040 Hb_004459_040 Hb_033153_060--Hb_004459_040 Hb_006541_010 Hb_006541_010 Hb_033153_060--Hb_006541_010 Hb_007576_170 Hb_007576_170 Hb_033153_060--Hb_007576_170 Hb_000042_200 Hb_000042_200 Hb_033153_060--Hb_000042_200 Hb_007065_010 Hb_007065_010 Hb_033153_060--Hb_007065_010 Hb_000789_230 Hb_000789_230 Hb_033153_060--Hb_000789_230 Hb_004459_040--Hb_007576_170 Hb_000680_140 Hb_000680_140 Hb_004459_040--Hb_000680_140 Hb_004459_040--Hb_006541_010 Hb_002687_170 Hb_002687_170 Hb_004459_040--Hb_002687_170 Hb_000224_140 Hb_000224_140 Hb_004459_040--Hb_000224_140 Hb_001616_040 Hb_001616_040 Hb_006541_010--Hb_001616_040 Hb_006541_010--Hb_007576_170 Hb_011644_030 Hb_011644_030 Hb_006541_010--Hb_011644_030 Hb_007441_040 Hb_007441_040 Hb_006541_010--Hb_007441_040 Hb_000431_070 Hb_000431_070 Hb_007576_170--Hb_000431_070 Hb_002798_020 Hb_002798_020 Hb_007576_170--Hb_002798_020 Hb_017225_020 Hb_017225_020 Hb_007576_170--Hb_017225_020 Hb_002918_290 Hb_002918_290 Hb_000042_200--Hb_002918_290 Hb_001953_090 Hb_001953_090 Hb_000042_200--Hb_001953_090 Hb_005463_140 Hb_005463_140 Hb_000042_200--Hb_005463_140 Hb_001284_030 Hb_001284_030 Hb_000042_200--Hb_001284_030 Hb_000042_200--Hb_004459_040 Hb_007065_010--Hb_002798_020 Hb_007065_010--Hb_000789_230 Hb_000735_090 Hb_000735_090 Hb_007065_010--Hb_000735_090 Hb_000016_080 Hb_000016_080 Hb_007065_010--Hb_000016_080 Hb_002613_020 Hb_002613_020 Hb_007065_010--Hb_002613_020 Hb_001989_090 Hb_001989_090 Hb_007065_010--Hb_001989_090 Hb_000789_230--Hb_000016_080 Hb_002110_200 Hb_002110_200 Hb_000789_230--Hb_002110_200 Hb_000254_050 Hb_000254_050 Hb_000789_230--Hb_000254_050 Hb_017413_010 Hb_017413_010 Hb_000789_230--Hb_017413_010 Hb_000789_230--Hb_005463_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.4515 22.1736 40.0767 67.9487 37.5013 68.7246
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
146.815 192.934 85.7287 51.9047 72.4007

CAGE analysis