Hb_033273_010

Information

Type -
Description -
Location Contig33273: 486-1479
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34909: 525-1299 , PASA_asmbl_34910: 852-1299
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033273_010 0.0 - - -
2 Hb_000045_100 0.00711062 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001950_050 0.0136900227 - - -
4 Hb_000421_150 0.0200902472 - - Zinc finger protein GIS2 [Medicago truncatula]
5 Hb_000552_040 0.0203925733 - - -
6 Hb_007101_240 0.021268786 - - conserved hypothetical protein [Ricinus communis]
7 Hb_010681_020 0.0222811671 - - JHL22C18.10 [Jatropha curcas]
8 Hb_000483_290 0.022512806 - - PREDICTED: ankyrin-1-like [Prunus mume]
9 Hb_002281_030 0.0345973175 - - -
10 Hb_000345_520 0.0349634812 - - hypothetical protein POPTR_0013s02440g [Populus trichocarpa]
11 Hb_023280_020 0.0363223779 - - hypothetical protein JCGZ_21650 [Jatropha curcas]
12 Hb_002792_040 0.0389955857 - - -
13 Hb_000819_050 0.0393414989 - - hypothetical protein Csa_4G290160 [Cucumis sativus]
14 Hb_142461_010 0.0528352262 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
15 Hb_007455_010 0.0539537841 - - PREDICTED: uncharacterized protein LOC105800996 [Gossypium raimondii]
16 Hb_051677_010 0.0575964289 - - Uncharacterized protein TCM_017953 [Theobroma cacao]
17 Hb_002391_060 0.0583914734 - - PREDICTED: uncharacterized protein LOC100853799 [Vitis vinifera]
18 Hb_175976_020 0.0605913847 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
19 Hb_001424_050 0.0665346511 - - PREDICTED: zinc finger protein HD1-like isoform X2 [Jatropha curcas]
20 Hb_005656_020 0.0680108777 - - PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]

Gene co-expression network

sample Hb_033273_010 Hb_033273_010 Hb_000045_100 Hb_000045_100 Hb_033273_010--Hb_000045_100 Hb_001950_050 Hb_001950_050 Hb_033273_010--Hb_001950_050 Hb_000421_150 Hb_000421_150 Hb_033273_010--Hb_000421_150 Hb_000552_040 Hb_000552_040 Hb_033273_010--Hb_000552_040 Hb_007101_240 Hb_007101_240 Hb_033273_010--Hb_007101_240 Hb_010681_020 Hb_010681_020 Hb_033273_010--Hb_010681_020 Hb_000045_100--Hb_000421_150 Hb_000045_100--Hb_007101_240 Hb_000045_100--Hb_010681_020 Hb_000483_290 Hb_000483_290 Hb_000045_100--Hb_000483_290 Hb_000045_100--Hb_001950_050 Hb_001950_050--Hb_000552_040 Hb_002281_030 Hb_002281_030 Hb_001950_050--Hb_002281_030 Hb_002792_040 Hb_002792_040 Hb_001950_050--Hb_002792_040 Hb_001950_050--Hb_000421_150 Hb_000421_150--Hb_007101_240 Hb_000421_150--Hb_010681_020 Hb_000421_150--Hb_000483_290 Hb_000345_520 Hb_000345_520 Hb_000421_150--Hb_000345_520 Hb_023280_020 Hb_023280_020 Hb_000421_150--Hb_023280_020 Hb_000552_040--Hb_002281_030 Hb_000552_040--Hb_002792_040 Hb_000552_040--Hb_000045_100 Hb_007455_010 Hb_007455_010 Hb_000552_040--Hb_007455_010 Hb_007101_240--Hb_010681_020 Hb_007101_240--Hb_000483_290 Hb_007101_240--Hb_000345_520 Hb_007101_240--Hb_023280_020 Hb_010681_020--Hb_000483_290 Hb_010681_020--Hb_000345_520 Hb_010681_020--Hb_023280_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.350522 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0749978 0

CAGE analysis