Hb_033312_010

Information

Type -
Description -
Location Contig33312: 19488-37398
Sequence    

Annotation

kegg
ID pop:POPTR_0005s14610g
description hypothetical protein
nr
ID XP_012077803.1
description PREDICTED: valine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]
swissprot
ID Q72ZW8
description Valine--tRNA ligase OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=valS PE=3 SV=1
trembl
ID A0A067KDU4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13438 PE=3 SV=1
Gene Ontology
ID GO:0005737
description valine--trna mitochondrial isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34945: 19864-20914 , PASA_asmbl_34947: 22191-27591 , PASA_asmbl_34948: 22191-27591 , PASA_asmbl_34949: 25646-25913 , PASA_asmbl_34950: 28594-30322 , PASA_asmbl_34951: 30613-37319
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033312_010 0.0 - - PREDICTED: valine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]
2 Hb_114310_070 0.0632069752 - - GTP-dependent nucleic acid-binding protein engD, putative [Ricinus communis]
3 Hb_013405_080 0.0769996045 - - PREDICTED: proline--tRNA ligase [Jatropha curcas]
4 Hb_001660_120 0.0775583751 - - PREDICTED: adenylate kinase, chloroplastic [Jatropha curcas]
5 Hb_134849_010 0.0781518718 - - ATP synthase subunit d, putative [Ricinus communis]
6 Hb_002774_190 0.0840810097 - - Endoplasmic reticulum-Golgi intermediate compartment protein, putative [Ricinus communis]
7 Hb_000032_500 0.0844539528 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
8 Hb_007012_030 0.0847179087 - - PREDICTED: transmembrane and coiled-coil domain-containing protein 4-like isoform X1 [Jatropha curcas]
9 Hb_012150_030 0.084918259 - - PREDICTED: aspartate--tRNA ligase, mitochondrial [Jatropha curcas]
10 Hb_000941_100 0.0861500136 - - thioredoxin-like 5 mRNA family protein [Populus trichocarpa]
11 Hb_000144_060 0.0868481824 - - PREDICTED: uncharacterized protein At5g03900, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_000311_120 0.0886746999 - - PREDICTED: NADPH-dependent thioredoxin reductase 3 [Populus euphratica]
13 Hb_002542_160 0.0889452486 - - PREDICTED: peptide chain release factor APG3, chloroplastic [Jatropha curcas]
14 Hb_025477_050 0.089886951 - - ABC transporter family protein [Hevea brasiliensis]
15 Hb_000220_210 0.0898959402 - - PREDICTED: sec-independent protein translocase protein TATC, chloroplastic [Jatropha curcas]
16 Hb_005260_030 0.0904750257 - - PREDICTED: uncharacterized protein LOC105633782 [Jatropha curcas]
17 Hb_010174_090 0.0907664381 - - PREDICTED: ALBINO3-like protein 1, chloroplastic [Jatropha curcas]
18 Hb_003053_110 0.0907803031 - - PREDICTED: protease Do-like 1, chloroplastic [Jatropha curcas]
19 Hb_113853_010 0.0916162776 - - 50S ribosomal protein L2, putative [Ricinus communis]
20 Hb_001109_050 0.0917538447 - - PREDICTED: ankyrin-1 [Jatropha curcas]

Gene co-expression network

sample Hb_033312_010 Hb_033312_010 Hb_114310_070 Hb_114310_070 Hb_033312_010--Hb_114310_070 Hb_013405_080 Hb_013405_080 Hb_033312_010--Hb_013405_080 Hb_001660_120 Hb_001660_120 Hb_033312_010--Hb_001660_120 Hb_134849_010 Hb_134849_010 Hb_033312_010--Hb_134849_010 Hb_002774_190 Hb_002774_190 Hb_033312_010--Hb_002774_190 Hb_000032_500 Hb_000032_500 Hb_033312_010--Hb_000032_500 Hb_000237_200 Hb_000237_200 Hb_114310_070--Hb_000237_200 Hb_000748_090 Hb_000748_090 Hb_114310_070--Hb_000748_090 Hb_007012_030 Hb_007012_030 Hb_114310_070--Hb_007012_030 Hb_002876_300 Hb_002876_300 Hb_114310_070--Hb_002876_300 Hb_002150_140 Hb_002150_140 Hb_114310_070--Hb_002150_140 Hb_013405_080--Hb_001660_120 Hb_025477_050 Hb_025477_050 Hb_013405_080--Hb_025477_050 Hb_000300_470 Hb_000300_470 Hb_013405_080--Hb_000300_470 Hb_005250_010 Hb_005250_010 Hb_013405_080--Hb_005250_010 Hb_000033_110 Hb_000033_110 Hb_013405_080--Hb_000033_110 Hb_000320_470 Hb_000320_470 Hb_013405_080--Hb_000320_470 Hb_001662_140 Hb_001662_140 Hb_001660_120--Hb_001662_140 Hb_000363_060 Hb_000363_060 Hb_001660_120--Hb_000363_060 Hb_000331_130 Hb_000331_130 Hb_001660_120--Hb_000331_130 Hb_000221_140 Hb_000221_140 Hb_001660_120--Hb_000221_140 Hb_003053_110 Hb_003053_110 Hb_134849_010--Hb_003053_110 Hb_012150_030 Hb_012150_030 Hb_134849_010--Hb_012150_030 Hb_134849_010--Hb_000032_500 Hb_134849_010--Hb_002774_190 Hb_048093_010 Hb_048093_010 Hb_134849_010--Hb_048093_010 Hb_000212_120 Hb_000212_120 Hb_002774_190--Hb_000212_120 Hb_028487_070 Hb_028487_070 Hb_002774_190--Hb_028487_070 Hb_032202_220 Hb_032202_220 Hb_002774_190--Hb_032202_220 Hb_000375_390 Hb_000375_390 Hb_002774_190--Hb_000375_390 Hb_000061_180 Hb_000061_180 Hb_002774_190--Hb_000061_180 Hb_001677_220 Hb_001677_220 Hb_000032_500--Hb_001677_220 Hb_001105_040 Hb_001105_040 Hb_000032_500--Hb_001105_040 Hb_000941_100 Hb_000941_100 Hb_000032_500--Hb_000941_100 Hb_000200_010 Hb_000200_010 Hb_000032_500--Hb_000200_010 Hb_008705_020 Hb_008705_020 Hb_000032_500--Hb_008705_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.76554 2.9967 5.33305 3.23504 2.37227 2.3091
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.52234 2.88724 1.35071 2.87746 8.28848

CAGE analysis