Hb_033312_100

Information

Type -
Description -
Location Contig33312: 96012-97123
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0043229
description hmg-y-related protein a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34968: 95582-97561
cDNA
(Sanger)
(ID:Location)		 038_J24.ab1: 95982-97356 , 043_L21.ab1: 95582-97013

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033312_100 0.0 - - -
2 Hb_002025_280 0.0465593594 - - PREDICTED: uncharacterized protein LOC105634201 [Jatropha curcas]
3 Hb_000531_010 0.0497247924 transcription factor TF Family: G2-like hypothetical protein POPTR_0018s14830g [Populus trichocarpa]
4 Hb_002766_070 0.0549004515 transcription factor TF Family: MYB hypothetical protein JCGZ_17894 [Jatropha curcas]
5 Hb_000422_040 0.0791840908 - - hypothetical protein CICLE_v10013147mg [Citrus clementina]
6 Hb_059502_010 0.0811191993 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
7 Hb_046204_010 0.0854274055 - - PREDICTED: peroxidase 5-like [Jatropha curcas]
8 Hb_007304_020 0.0945946076 - - PREDICTED: uncharacterized protein LOC100256879 [Vitis vinifera]
9 Hb_074674_010 0.1006463487 - - Cell division cycle protein cdt2, putative [Ricinus communis]
10 Hb_085600_010 0.1031569814 - - PREDICTED: peroxidase 24-like [Jatropha curcas]
11 Hb_001384_030 0.1032154152 - - PREDICTED: uncharacterized protein LOC105049010 [Elaeis guineensis]
12 Hb_180864_010 0.1067005276 - - hypothetical protein B456_010G097000 [Gossypium raimondii]
13 Hb_001242_170 0.1132039839 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001247_060 0.1185159492 - - zinc finger protein, putative [Ricinus communis]
15 Hb_005306_060 0.1231169477 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 5 [Jatropha curcas]
16 Hb_000163_020 0.1245164595 - - -
17 Hb_000035_230 0.1252621585 - - PREDICTED: early nodulin-like protein 1 [Jatropha curcas]
18 Hb_010369_020 0.1346197722 - - hypothetical protein JCGZ_21088 [Jatropha curcas]
19 Hb_000984_280 0.1362842375 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 2 [Jatropha curcas]
20 Hb_000089_090 0.1378115924 - - hypothetical protein POPTR_0019s12670g [Populus trichocarpa]

Gene co-expression network

sample Hb_033312_100 Hb_033312_100 Hb_002025_280 Hb_002025_280 Hb_033312_100--Hb_002025_280 Hb_000531_010 Hb_000531_010 Hb_033312_100--Hb_000531_010 Hb_002766_070 Hb_002766_070 Hb_033312_100--Hb_002766_070 Hb_000422_040 Hb_000422_040 Hb_033312_100--Hb_000422_040 Hb_059502_010 Hb_059502_010 Hb_033312_100--Hb_059502_010 Hb_046204_010 Hb_046204_010 Hb_033312_100--Hb_046204_010 Hb_002025_280--Hb_002766_070 Hb_002025_280--Hb_000531_010 Hb_085600_010 Hb_085600_010 Hb_002025_280--Hb_085600_010 Hb_001242_170 Hb_001242_170 Hb_002025_280--Hb_001242_170 Hb_180864_010 Hb_180864_010 Hb_002025_280--Hb_180864_010 Hb_000531_010--Hb_059502_010 Hb_000531_010--Hb_002766_070 Hb_000531_010--Hb_180864_010 Hb_000531_010--Hb_085600_010 Hb_002766_070--Hb_085600_010 Hb_002766_070--Hb_001242_170 Hb_002766_070--Hb_180864_010 Hb_000422_040--Hb_046204_010 Hb_074674_010 Hb_074674_010 Hb_000422_040--Hb_074674_010 Hb_000422_040--Hb_002025_280 Hb_001384_030 Hb_001384_030 Hb_000422_040--Hb_001384_030 Hb_000422_040--Hb_002766_070 Hb_007304_020 Hb_007304_020 Hb_059502_010--Hb_007304_020 Hb_004598_020 Hb_004598_020 Hb_059502_010--Hb_004598_020 Hb_059502_010--Hb_180864_010 Hb_001247_060 Hb_001247_060 Hb_059502_010--Hb_001247_060 Hb_046204_010--Hb_001384_030 Hb_046204_010--Hb_074674_010 Hb_046204_010--Hb_007304_020 Hb_000138_120 Hb_000138_120 Hb_046204_010--Hb_000138_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.55504 1.53103 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.230435 0

CAGE analysis