Hb_033312_140

Information

Type -
Description -
Location Contig33312: 124874-128842
Sequence    

Annotation

kegg
ID pop:POPTR_0017s02890g
description RNA and export factor-binding family protein
nr
ID XP_006372569.1
description RNA and export factor-binding family protein [Populus trichocarpa]
swissprot
ID Q94EH8
description THO complex subunit 4C OS=Arabidopsis thaliana GN=ALY3 PE=1 SV=1
trembl
ID U5FKA3
description RNA and export factor-binding family protein OS=Populus trichocarpa GN=POPTR_0017s02890g PE=4 SV=1
Gene Ontology
ID GO:0097159
description rna and export factor-binding family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34974: 124950-128849
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033312_140 0.0 - - RNA and export factor-binding family protein [Populus trichocarpa]
2 Hb_041392_010 0.0734941074 - - PREDICTED: DNA-binding protein BIN4 [Jatropha curcas]
3 Hb_150204_010 0.0903304911 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
4 Hb_002774_070 0.0935445573 - - hypothetical protein EUGRSUZ_F00307 [Eucalyptus grandis]
5 Hb_004198_010 0.0945343859 - - Eukaryotic translation initiation factor 2 subunit beta [Theobroma cacao]
6 Hb_003656_140 0.0946154721 - - PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Jatropha curcas]
7 Hb_003434_060 0.0966303267 - - PREDICTED: membrane-bound transcription factor site-2 protease homolog isoform X1 [Jatropha curcas]
8 Hb_000307_200 0.0968394442 - - PREDICTED: uncharacterized protein LOC105638529 [Jatropha curcas]
9 Hb_031862_180 0.1021831617 - - PREDICTED: uncharacterized protein LOC105644669 [Jatropha curcas]
10 Hb_000749_150 0.1046831361 - - -
11 Hb_023001_050 0.1047705998 - - hypothetical protein POPTR_0006s10330g [Populus trichocarpa]
12 Hb_005883_050 0.1048541868 - - PREDICTED: transportin-3 [Jatropha curcas]
13 Hb_010608_010 0.1059582508 - - PREDICTED: calcium-dependent protein kinase 3 [Jatropha curcas]
14 Hb_000390_060 0.1061992574 - - PREDICTED: F-box/kelch-repeat protein At5g60570-like [Jatropha curcas]
15 Hb_000956_030 0.1087281929 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
16 Hb_004450_010 0.109891968 - - PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]
17 Hb_006816_320 0.1106147943 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 16-like [Jatropha curcas]
18 Hb_144598_030 0.1114856119 - - PREDICTED: mitotic apparatus protein p62 [Jatropha curcas]
19 Hb_004447_060 0.1127360249 - - PREDICTED: uncharacterized protein LOC105636329 isoform X2 [Jatropha curcas]
20 Hb_008714_020 0.1131260083 - - PREDICTED: GTP-binding protein SAR1A-like [Jatropha curcas]

Gene co-expression network

sample Hb_033312_140 Hb_033312_140 Hb_041392_010 Hb_041392_010 Hb_033312_140--Hb_041392_010 Hb_150204_010 Hb_150204_010 Hb_033312_140--Hb_150204_010 Hb_002774_070 Hb_002774_070 Hb_033312_140--Hb_002774_070 Hb_004198_010 Hb_004198_010 Hb_033312_140--Hb_004198_010 Hb_003656_140 Hb_003656_140 Hb_033312_140--Hb_003656_140 Hb_003434_060 Hb_003434_060 Hb_033312_140--Hb_003434_060 Hb_041392_010--Hb_003656_140 Hb_023001_050 Hb_023001_050 Hb_041392_010--Hb_023001_050 Hb_000606_080 Hb_000606_080 Hb_041392_010--Hb_000606_080 Hb_041392_010--Hb_150204_010 Hb_150360_010 Hb_150360_010 Hb_041392_010--Hb_150360_010 Hb_150204_010--Hb_004198_010 Hb_004450_010 Hb_004450_010 Hb_150204_010--Hb_004450_010 Hb_083043_010 Hb_083043_010 Hb_150204_010--Hb_083043_010 Hb_150204_010--Hb_003434_060 Hb_009411_020 Hb_009411_020 Hb_002774_070--Hb_009411_020 Hb_000156_140 Hb_000156_140 Hb_002774_070--Hb_000156_140 Hb_005432_010 Hb_005432_010 Hb_002774_070--Hb_005432_010 Hb_002475_050 Hb_002475_050 Hb_002774_070--Hb_002475_050 Hb_000749_150 Hb_000749_150 Hb_002774_070--Hb_000749_150 Hb_000956_030 Hb_000956_030 Hb_004198_010--Hb_000956_030 Hb_004198_010--Hb_003434_060 Hb_000364_060 Hb_000364_060 Hb_004198_010--Hb_000364_060 Hb_000120_500 Hb_000120_500 Hb_004198_010--Hb_000120_500 Hb_004198_010--Hb_004450_010 Hb_003044_100 Hb_003044_100 Hb_004198_010--Hb_003044_100 Hb_002023_020 Hb_002023_020 Hb_003656_140--Hb_002023_020 Hb_137403_010 Hb_137403_010 Hb_003656_140--Hb_137403_010 Hb_187739_020 Hb_187739_020 Hb_003656_140--Hb_187739_020 Hb_003656_140--Hb_150360_010 Hb_000866_030 Hb_000866_030 Hb_003656_140--Hb_000866_030 Hb_000390_060 Hb_000390_060 Hb_003434_060--Hb_000390_060 Hb_003434_060--Hb_000956_030 Hb_003434_060--Hb_000120_500 Hb_005883_050 Hb_005883_050 Hb_003434_060--Hb_005883_050 Hb_000316_030 Hb_000316_030 Hb_003434_060--Hb_000316_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
79.3738 42.9443 38.2981 48.0398 101.368 223.379
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
64.1462 70.7241 61.6432 39.9975 20.7931

CAGE analysis