Hb_033327_010

Information

Type -
Description -
Location Contig33327: 636-3482
Sequence    

Annotation

kegg
ID gmx:732614
description POLLUX protein
nr
ID ABX57726.1
description SYM8 [Pisum sativum]
swissprot
ID Q4VY51
description Probable ion channel SYM8 OS=Pisum sativum GN=SYM8 PE=1 SV=3
trembl
ID A0A067L5C3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00230 PE=4 SV=1
Gene Ontology
ID GO:0006811
description ion channel dmi1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033327_010 0.0 - - SYM8 [Pisum sativum]
2 Hb_000284_170 0.1259964579 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
3 Hb_007120_010 0.1329444829 - - PREDICTED: uncharacterized protein LOC105634737 [Jatropha curcas]
4 Hb_000594_110 0.1361277907 transcription factor TF Family: RAV DNA-binding protein RAV1, putative [Ricinus communis]
5 Hb_005048_120 0.1415224068 - - -
6 Hb_000284_180 0.1511694821 - - hypothetical protein EUGRSUZ_B01865 [Eucalyptus grandis]
7 Hb_010142_040 0.1527562345 - - PREDICTED: classical arabinogalactan protein 4-like [Jatropha curcas]
8 Hb_000373_250 0.1553011303 - - PREDICTED: uncharacterized protein LOC105640939 [Jatropha curcas]
9 Hb_101058_020 0.1559627606 - - DWNN domain isoform 2 [Theobroma cacao]
10 Hb_002936_030 0.1597220385 - - PREDICTED: uncharacterized protein LOC105633479 isoform X1 [Jatropha curcas]
11 Hb_002445_130 0.160810286 - - Disease resistance protein RGA2, putative [Ricinus communis]
12 Hb_032920_040 0.1608751592 transcription factor TF Family: C2H2 hypothetical protein POPTR_0001s30260g [Populus trichocarpa]
13 Hb_001863_270 0.1612198732 - - hypothetical protein JCGZ_15813 [Jatropha curcas]
14 Hb_000836_160 0.1624326111 - - hypothetical protein JCGZ_14366 [Jatropha curcas]
15 Hb_000045_140 0.16306731 - - PREDICTED: nematode resistance protein-like HSPRO2 [Jatropha curcas]
16 Hb_113676_010 0.1631581691 - - PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
17 Hb_002311_150 0.1654410345 - - Protein COBRA precursor, putative [Ricinus communis]
18 Hb_002007_070 0.169709537 - - PREDICTED: serrate RNA effector molecule homolog [Jatropha curcas]
19 Hb_173271_010 0.1697484207 - - Disease resistance protein RPP13, putative [Ricinus communis]
20 Hb_001894_060 0.1712220778 - - PREDICTED: uncharacterized protein LOC105644596 [Jatropha curcas]

Gene co-expression network

sample Hb_033327_010 Hb_033327_010 Hb_000284_170 Hb_000284_170 Hb_033327_010--Hb_000284_170 Hb_007120_010 Hb_007120_010 Hb_033327_010--Hb_007120_010 Hb_000594_110 Hb_000594_110 Hb_033327_010--Hb_000594_110 Hb_005048_120 Hb_005048_120 Hb_033327_010--Hb_005048_120 Hb_000284_180 Hb_000284_180 Hb_033327_010--Hb_000284_180 Hb_010142_040 Hb_010142_040 Hb_033327_010--Hb_010142_040 Hb_001472_140 Hb_001472_140 Hb_000284_170--Hb_001472_140 Hb_000284_170--Hb_000594_110 Hb_000532_150 Hb_000532_150 Hb_000284_170--Hb_000532_150 Hb_000284_170--Hb_005048_120 Hb_094437_050 Hb_094437_050 Hb_000284_170--Hb_094437_050 Hb_000373_250 Hb_000373_250 Hb_007120_010--Hb_000373_250 Hb_001989_060 Hb_001989_060 Hb_007120_010--Hb_001989_060 Hb_000805_040 Hb_000805_040 Hb_007120_010--Hb_000805_040 Hb_001863_270 Hb_001863_270 Hb_007120_010--Hb_001863_270 Hb_000045_140 Hb_000045_140 Hb_007120_010--Hb_000045_140 Hb_002498_250 Hb_002498_250 Hb_007120_010--Hb_002498_250 Hb_041895_040 Hb_041895_040 Hb_000594_110--Hb_041895_040 Hb_102437_010 Hb_102437_010 Hb_000594_110--Hb_102437_010 Hb_000340_560 Hb_000340_560 Hb_000594_110--Hb_000340_560 Hb_002311_150 Hb_002311_150 Hb_000594_110--Hb_002311_150 Hb_002233_080 Hb_002233_080 Hb_000594_110--Hb_002233_080 Hb_002936_030 Hb_002936_030 Hb_005048_120--Hb_002936_030 Hb_012272_010 Hb_012272_010 Hb_005048_120--Hb_012272_010 Hb_010721_010 Hb_010721_010 Hb_005048_120--Hb_010721_010 Hb_001247_160 Hb_001247_160 Hb_005048_120--Hb_001247_160 Hb_005048_120--Hb_094437_050 Hb_007904_290 Hb_007904_290 Hb_005048_120--Hb_007904_290 Hb_000284_180--Hb_000045_140 Hb_000284_180--Hb_007120_010 Hb_000284_180--Hb_001989_060 Hb_181824_010 Hb_181824_010 Hb_000284_180--Hb_181824_010 Hb_000819_040 Hb_000819_040 Hb_000284_180--Hb_000819_040 Hb_000827_090 Hb_000827_090 Hb_010142_040--Hb_000827_090 Hb_032920_040 Hb_032920_040 Hb_010142_040--Hb_032920_040 Hb_001213_140 Hb_001213_140 Hb_010142_040--Hb_001213_140 Hb_000777_020 Hb_000777_020 Hb_010142_040--Hb_000777_020 Hb_027905_010 Hb_027905_010 Hb_010142_040--Hb_027905_010 Hb_000221_280 Hb_000221_280 Hb_010142_040--Hb_000221_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.32244 24.878 14.2357 13.8341 0.807582 1.60333
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.27172 0.856802 0 0.320803 1.25723

CAGE analysis