Hb_033363_070

Information

Type -
Description -
Location Contig33363: 57288-58074
Sequence    

Annotation

kegg
ID pvu:PHAVU_003G111700g
description hypothetical protein
nr
ID XP_011008515.1
description PREDICTED: LOW QUALITY PROTEIN: methionine aminopeptidase 1B, chloroplastic, partial [Populus euphratica]
swissprot
ID Q9FV52
description Methionine aminopeptidase 1B, chloroplastic OS=Arabidopsis thaliana GN=MAP1B PE=2 SV=2
trembl
ID V7C849
description Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G111700g PE=4 SV=1
Gene Ontology
ID GO:0009507
description methionine aminopeptidase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033363_070 0.0 - - PREDICTED: LOW QUALITY PROTEIN: methionine aminopeptidase 1B, chloroplastic, partial [Populus euphratica]
2 Hb_000087_030 0.1566993737 - - hypothetical protein JCGZ_02243 [Jatropha curcas]
3 Hb_012052_010 0.1674430758 - - PREDICTED: uncharacterized protein LOC103323653 [Prunus mume]
4 Hb_005714_130 0.1818479309 transcription factor TF Family: C2H2 unknown [Populus trichocarpa x Populus deltoides]
5 Hb_000051_170 0.2017757555 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
6 Hb_000656_100 0.2027198978 - - PREDICTED: uncharacterized protein LOC105633651 [Jatropha curcas]
7 Hb_004060_030 0.2028458216 - - PREDICTED: primase homolog protein [Jatropha curcas]
8 Hb_002007_180 0.2041726546 - - PREDICTED: uncharacterized protein LOC105647525 [Jatropha curcas]
9 Hb_013691_020 0.2092698405 - - transcription initiation factor iie, alpha subunit, putative [Ricinus communis]
10 Hb_001546_050 0.2105405624 - - -
11 Hb_004223_220 0.2113579705 - - PREDICTED: uncharacterized protein LOC105635366 isoform X1 [Jatropha curcas]
12 Hb_000007_460 0.2152518435 - - PREDICTED: uncharacterized protein LOC105641948 [Jatropha curcas]
13 Hb_013691_010 0.2154998866 - - PREDICTED: uncharacterized protein LOC103724099, partial [Phoenix dactylifera]
14 Hb_150023_010 0.2163271337 - - 50S ribosomal protein L2, putative [Ricinus communis]
15 Hb_005527_020 0.2182241185 - - PREDICTED: uncharacterized protein LOC105643027 [Jatropha curcas]
16 Hb_000074_060 0.2234805642 - - PREDICTED: membrane-associated progesterone-binding protein 4-like [Populus euphratica]
17 Hb_136731_010 0.2254146778 - - PREDICTED: uncharacterized protein LOC105628378 isoform X4 [Jatropha curcas]
18 Hb_003912_090 0.2254467868 - - peptidyl-tRNA hydrolase, putative [Ricinus communis]
19 Hb_000167_060 0.2270312979 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Jatropha curcas]
20 Hb_003405_050 0.227181909 - - -

Gene co-expression network

sample Hb_033363_070 Hb_033363_070 Hb_000087_030 Hb_000087_030 Hb_033363_070--Hb_000087_030 Hb_012052_010 Hb_012052_010 Hb_033363_070--Hb_012052_010 Hb_005714_130 Hb_005714_130 Hb_033363_070--Hb_005714_130 Hb_000051_170 Hb_000051_170 Hb_033363_070--Hb_000051_170 Hb_000656_100 Hb_000656_100 Hb_033363_070--Hb_000656_100 Hb_004060_030 Hb_004060_030 Hb_033363_070--Hb_004060_030 Hb_000087_030--Hb_000051_170 Hb_000087_030--Hb_005714_130 Hb_165279_010 Hb_165279_010 Hb_000087_030--Hb_165279_010 Hb_000130_190 Hb_000130_190 Hb_000087_030--Hb_000130_190 Hb_011671_090 Hb_011671_090 Hb_000087_030--Hb_011671_090 Hb_027472_030 Hb_027472_030 Hb_012052_010--Hb_027472_030 Hb_000007_460 Hb_000007_460 Hb_012052_010--Hb_000007_460 Hb_000161_120 Hb_000161_120 Hb_012052_010--Hb_000161_120 Hb_003581_010 Hb_003581_010 Hb_012052_010--Hb_003581_010 Hb_005054_070 Hb_005054_070 Hb_012052_010--Hb_005054_070 Hb_010565_010 Hb_010565_010 Hb_005714_130--Hb_010565_010 Hb_002007_180 Hb_002007_180 Hb_005714_130--Hb_002007_180 Hb_001767_120 Hb_001767_120 Hb_005714_130--Hb_001767_120 Hb_041392_010 Hb_041392_010 Hb_005714_130--Hb_041392_010 Hb_005367_010 Hb_005367_010 Hb_005714_130--Hb_005367_010 Hb_128998_010 Hb_128998_010 Hb_005714_130--Hb_128998_010 Hb_000051_170--Hb_011671_090 Hb_000991_070 Hb_000991_070 Hb_000051_170--Hb_000991_070 Hb_156825_010 Hb_156825_010 Hb_000051_170--Hb_156825_010 Hb_001380_020 Hb_001380_020 Hb_000051_170--Hb_001380_020 Hb_001546_050 Hb_001546_050 Hb_000051_170--Hb_001546_050 Hb_067776_010 Hb_067776_010 Hb_000656_100--Hb_067776_010 Hb_032927_010 Hb_032927_010 Hb_000656_100--Hb_032927_010 Hb_007012_020 Hb_007012_020 Hb_000656_100--Hb_007012_020 Hb_006502_080 Hb_006502_080 Hb_000656_100--Hb_006502_080 Hb_000812_040 Hb_000812_040 Hb_000656_100--Hb_000812_040 Hb_005615_080 Hb_005615_080 Hb_000656_100--Hb_005615_080 Hb_026745_020 Hb_026745_020 Hb_004060_030--Hb_026745_020 Hb_005085_030 Hb_005085_030 Hb_004060_030--Hb_005085_030 Hb_028420_020 Hb_028420_020 Hb_004060_030--Hb_028420_020 Hb_002174_050 Hb_002174_050 Hb_004060_030--Hb_002174_050 Hb_005862_010 Hb_005862_010 Hb_004060_030--Hb_005862_010 Hb_000329_560 Hb_000329_560 Hb_004060_030--Hb_000329_560
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.32419 0.17195 0.200255 0.632446 0.475331 1.71141
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.383798 1.0551 0 0.321725 0.533336

CAGE analysis