Hb_033376_010

Information

Type -
Description -
Location Contig33376: 5992-6339
Sequence    

Annotation

kegg
ID pop:POPTR_0008s02960g
description hypothetical protein
nr
ID XP_006379504.1
description hypothetical protein POPTR_0008s02960g [Populus trichocarpa]
swissprot
ID Q9LZ60
description Cyclin-dependent protein kinase inhibitor SMR3 OS=Arabidopsis thaliana GN=SMR3 PE=2 SV=1
trembl
ID U5G4W0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s02960g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35017: 5921-6590
cDNA
(Sanger)
(ID:Location)		 022_C15.ab1: 5927-6378

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033376_010 0.0 - - hypothetical protein POPTR_0008s02960g [Populus trichocarpa]
2 Hb_000130_100 0.1367647705 - - hypothetical protein CICLE_v10022662mg [Citrus clementina]
3 Hb_000975_180 0.1433899368 - - Uncharacterized protein TCM_041879 [Theobroma cacao]
4 Hb_000463_130 0.1500107667 - - unnamed protein product [Coffea canephora]
5 Hb_000181_380 0.1564745161 - - PREDICTED: cytochrome c oxidase copper chaperone 1 [Jatropha curcas]
6 Hb_001922_180 0.170209163 - - hevamine-A precursor, putative [Ricinus communis]
7 Hb_021924_010 0.1791566746 - - hypothetical protein CISIN_1g0405342mg, partial [Citrus sinensis]
8 Hb_005245_070 0.1796647331 - - PREDICTED: uncharacterized protein LOC105643658 [Jatropha curcas]
9 Hb_000260_790 0.1799975336 - - NADH dehydrogenase 1 alpha subcomplex subunit 12 isoform 1 [Theobroma cacao]
10 Hb_005045_070 0.1878041468 - - PREDICTED: deSI-like protein At4g17486 [Jatropha curcas]
11 Hb_077399_010 0.189738702 - - hypothetical protein POPTR_0003s09910g [Populus trichocarpa]
12 Hb_002631_260 0.1943750789 - - PREDICTED: proteasome subunit alpha type-2-A [Jatropha curcas]
13 Hb_182005_010 0.1967113437 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]
14 Hb_008206_100 0.1973204499 - - PREDICTED: uncharacterized protein LOC105638302 [Jatropha curcas]
15 Hb_006452_110 0.1980283486 - - Ubiquinol-cytochrome c reductase complex 7.8 kDa protein, putative [Ricinus communis]
16 Hb_002081_030 0.1985711427 - - unnamed protein product [Coffea canephora]
17 Hb_000215_330 0.2006156457 - - PREDICTED: AP-4 complex subunit sigma [Jatropha curcas]
18 Hb_014834_030 0.2017836888 - - -
19 Hb_001635_130 0.2028620037 - - PREDICTED: 60S ribosomal protein L28-2-like [Jatropha curcas]
20 Hb_000975_230 0.2038001835 - - hypothetical protein ZEAMMB73_864543 [Zea mays]

Gene co-expression network

sample Hb_033376_010 Hb_033376_010 Hb_000130_100 Hb_000130_100 Hb_033376_010--Hb_000130_100 Hb_000975_180 Hb_000975_180 Hb_033376_010--Hb_000975_180 Hb_000463_130 Hb_000463_130 Hb_033376_010--Hb_000463_130 Hb_000181_380 Hb_000181_380 Hb_033376_010--Hb_000181_380 Hb_001922_180 Hb_001922_180 Hb_033376_010--Hb_001922_180 Hb_021924_010 Hb_021924_010 Hb_033376_010--Hb_021924_010 Hb_003018_050 Hb_003018_050 Hb_000130_100--Hb_003018_050 Hb_000130_100--Hb_000975_180 Hb_006452_040 Hb_006452_040 Hb_000130_100--Hb_006452_040 Hb_002324_010 Hb_002324_010 Hb_000130_100--Hb_002324_010 Hb_000107_300 Hb_000107_300 Hb_000130_100--Hb_000107_300 Hb_005045_070 Hb_005045_070 Hb_000130_100--Hb_005045_070 Hb_000975_180--Hb_021924_010 Hb_001488_400 Hb_001488_400 Hb_000975_180--Hb_001488_400 Hb_000270_720 Hb_000270_720 Hb_000975_180--Hb_000270_720 Hb_004755_030 Hb_004755_030 Hb_000975_180--Hb_004755_030 Hb_000789_110 Hb_000789_110 Hb_000975_180--Hb_000789_110 Hb_000215_330 Hb_000215_330 Hb_000463_130--Hb_000215_330 Hb_016734_070 Hb_016734_070 Hb_000463_130--Hb_016734_070 Hb_002314_010 Hb_002314_010 Hb_000463_130--Hb_002314_010 Hb_000463_130--Hb_000130_100 Hb_000975_230 Hb_000975_230 Hb_000463_130--Hb_000975_230 Hb_003376_190 Hb_003376_190 Hb_000463_130--Hb_003376_190 Hb_014834_030 Hb_014834_030 Hb_000181_380--Hb_014834_030 Hb_001935_150 Hb_001935_150 Hb_000181_380--Hb_001935_150 Hb_000181_380--Hb_000975_180 Hb_000181_380--Hb_021924_010 Hb_000181_380--Hb_000463_130 Hb_006541_020 Hb_006541_020 Hb_000181_380--Hb_006541_020 Hb_001205_160 Hb_001205_160 Hb_001922_180--Hb_001205_160 Hb_001922_180--Hb_000975_180 Hb_001922_180--Hb_000130_100 Hb_000032_050 Hb_000032_050 Hb_001922_180--Hb_000032_050 Hb_003502_100 Hb_003502_100 Hb_001922_180--Hb_003502_100 Hb_021924_010--Hb_001488_400 Hb_023732_060 Hb_023732_060 Hb_021924_010--Hb_023732_060 Hb_021924_010--Hb_004755_030 Hb_003226_220 Hb_003226_220 Hb_021924_010--Hb_003226_220 Hb_003988_040 Hb_003988_040 Hb_021924_010--Hb_003988_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.779 3.94208 14.3035 116.329 3.25137 18.7934
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
85.753 141.658 30.732 8.68839 14.8942

CAGE analysis