Hb_033413_010

Information

Type -
Description -
Location Contig33413: 19902-21449
Sequence    

Annotation

kegg
ID rcu:RCOM_1335350
description Reticuline oxidase precursor, putative (EC:1.21.3.3)
nr
ID XP_002523156.1
description Reticuline oxidase precursor, putative [Ricinus communis]
swissprot
ID Q9SVG4
description Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2
trembl
ID B9SAZ6
description Reticuline oxidase, putative OS=Ricinus communis GN=RCOM_1335350 PE=4 SV=1
Gene Ontology
ID GO:0008762
description reticuline oxidase-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35063: 19766-21709
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033413_010 0.0 - - Reticuline oxidase precursor, putative [Ricinus communis]
2 Hb_001006_220 0.1491545553 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 [Jatropha curcas]
3 Hb_026889_040 0.1512087556 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
4 Hb_091349_010 0.1517807689 - - hypothetical protein EUGRSUZ_C02287 [Eucalyptus grandis]
5 Hb_001481_130 0.1669094161 - - conserved hypothetical protein [Ricinus communis]
6 Hb_088327_010 0.1741707955 - - PREDICTED: serine hydroxymethyltransferase 7 [Jatropha curcas]
7 Hb_000703_280 0.1793580716 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
8 Hb_007574_070 0.1859615413 - - fatty acid desaturase, putative [Ricinus communis]
9 Hb_025466_010 0.1882474471 - - unnamed protein product [Vitis vinifera]
10 Hb_011139_040 0.1926070492 transcription factor TF Family: bHLH PREDICTED: transcription factor SPATULA-like isoform X2 [Jatropha curcas]
11 Hb_000019_180 0.1959299497 transcription factor TF Family: SET Histone-lysine N-methyltransferase family protein [Populus trichocarpa]
12 Hb_038564_010 0.199020332 - - PREDICTED: serine/threonine-protein phosphatase 5 isoform X2 [Jatropha curcas]
13 Hb_126757_010 0.199078443 - - protein phosphatase 2c, putative [Ricinus communis]
14 Hb_021943_090 0.2014508499 - - PREDICTED: probable methylenetetrahydrofolate reductase [Jatropha curcas]
15 Hb_003244_020 0.2031944898 - - PREDICTED: serine carboxypeptidase-like 27 [Jatropha curcas]
16 Hb_006903_030 0.2067846094 - - PREDICTED: uncharacterized protein LOC105640666 [Jatropha curcas]
17 Hb_000671_130 0.2090972588 - - PREDICTED: CMP-sialic acid transporter 2 isoform X2 [Jatropha curcas]
18 Hb_006277_010 0.2092325694 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Gossypium raimondii]
19 Hb_002876_270 0.2092555633 - - PREDICTED: probable magnesium transporter NIPA4 isoform X1 [Jatropha curcas]
20 Hb_003305_040 0.2118145236 - - AP47/50p mRNA family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_033413_010 Hb_033413_010 Hb_001006_220 Hb_001006_220 Hb_033413_010--Hb_001006_220 Hb_026889_040 Hb_026889_040 Hb_033413_010--Hb_026889_040 Hb_091349_010 Hb_091349_010 Hb_033413_010--Hb_091349_010 Hb_001481_130 Hb_001481_130 Hb_033413_010--Hb_001481_130 Hb_088327_010 Hb_088327_010 Hb_033413_010--Hb_088327_010 Hb_000703_280 Hb_000703_280 Hb_033413_010--Hb_000703_280 Hb_001006_220--Hb_026889_040 Hb_001006_220--Hb_088327_010 Hb_001006_220--Hb_091349_010 Hb_000115_010 Hb_000115_010 Hb_001006_220--Hb_000115_010 Hb_001008_180 Hb_001008_180 Hb_001006_220--Hb_001008_180 Hb_003878_050 Hb_003878_050 Hb_026889_040--Hb_003878_050 Hb_000019_180 Hb_000019_180 Hb_026889_040--Hb_000019_180 Hb_004158_020 Hb_004158_020 Hb_026889_040--Hb_004158_020 Hb_026889_040--Hb_091349_010 Hb_026889_040--Hb_000703_280 Hb_011861_100 Hb_011861_100 Hb_026889_040--Hb_011861_100 Hb_000671_130 Hb_000671_130 Hb_091349_010--Hb_000671_130 Hb_010577_010 Hb_010577_010 Hb_091349_010--Hb_010577_010 Hb_000107_110 Hb_000107_110 Hb_091349_010--Hb_000107_110 Hb_001894_070 Hb_001894_070 Hb_091349_010--Hb_001894_070 Hb_033152_070 Hb_033152_070 Hb_091349_010--Hb_033152_070 Hb_004881_030 Hb_004881_030 Hb_091349_010--Hb_004881_030 Hb_005348_110 Hb_005348_110 Hb_001481_130--Hb_005348_110 Hb_011139_040 Hb_011139_040 Hb_001481_130--Hb_011139_040 Hb_000849_120 Hb_000849_120 Hb_001481_130--Hb_000849_120 Hb_069355_010 Hb_069355_010 Hb_001481_130--Hb_069355_010 Hb_000465_320 Hb_000465_320 Hb_001481_130--Hb_000465_320 Hb_000946_110 Hb_000946_110 Hb_088327_010--Hb_000946_110 Hb_088327_010--Hb_091349_010 Hb_038564_010 Hb_038564_010 Hb_088327_010--Hb_038564_010 Hb_002043_040 Hb_002043_040 Hb_088327_010--Hb_002043_040 Hb_000704_040 Hb_000704_040 Hb_088327_010--Hb_000704_040 Hb_000381_010 Hb_000381_010 Hb_088327_010--Hb_000381_010 Hb_000103_250 Hb_000103_250 Hb_000703_280--Hb_000103_250 Hb_000012_080 Hb_000012_080 Hb_000703_280--Hb_000012_080 Hb_021943_090 Hb_021943_090 Hb_000703_280--Hb_021943_090 Hb_001904_050 Hb_001904_050 Hb_000703_280--Hb_001904_050 Hb_000244_170 Hb_000244_170 Hb_000703_280--Hb_000244_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.148312 0.576251 2.13094 11.1293 1.95465 1.93379
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.83728 1.72982 7.4437 3.46982 4.31848

CAGE analysis