Hb_033448_010

Information

Type -
Description -
Location Contig33448: 1299-3643
Sequence    

Annotation

kegg
ID sbi:SORBI_04g016750
description SORBIDRAFT_04g016750, Sb04g016750; hypothetical protein
nr
ID KDP27743.1
description hypothetical protein JCGZ_19772 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JYA4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19772 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35068: 1342-3533
cDNA
(Sanger)
(ID:Location)		 052_I09.ab1: 1342-3533

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033448_010 0.0 - - hypothetical protein JCGZ_19772 [Jatropha curcas]
2 Hb_000563_530 0.0959994173 - - PREDICTED: uncharacterized protein LOC105643453 [Jatropha curcas]
3 Hb_000369_090 0.1076890148 - - -
4 Hb_000184_120 0.1134869779 - - hypothetical protein JCGZ_18526 [Jatropha curcas]
5 Hb_002200_120 0.1186098343 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000189_530 0.1194845595 - - 40S ribosomal protein S24B [Hevea brasiliensis]
7 Hb_000366_100 0.1234268099 - - 60S ribosomal protein L7aA [Hevea brasiliensis]
8 Hb_008016_010 0.1254790453 - - PREDICTED: protein LURP-one-related 15-like isoform X1 [Jatropha curcas]
9 Hb_000603_220 0.1272462679 - - PREDICTED: MADS-box transcription factor 23 [Jatropha curcas]
10 Hb_000831_060 0.1275126497 - - 17.5 kd heat shock family protein [Populus trichocarpa]
11 Hb_000330_170 0.1279911483 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein RF9 [Jatropha curcas]
12 Hb_008725_200 0.1336531505 - - PREDICTED: uncharacterized protein LOC105642590 [Jatropha curcas]
13 Hb_011016_090 0.1362054772 - - PREDICTED: 50S ribosomal protein L24, chloroplastic [Populus euphratica]
14 Hb_077562_040 0.1406066552 - - hypothetical protein JCGZ_24573 [Jatropha curcas]
15 Hb_023675_010 0.1410624371 - - -
16 Hb_007317_220 0.143551557 - - hypothetical protein JCGZ_12701 [Jatropha curcas]
17 Hb_000175_400 0.143641436 - - conserved hypothetical protein [Ricinus communis]
18 Hb_049415_020 0.1447445654 - - -
19 Hb_000152_430 0.1452009323 - - PREDICTED: 40S ribosomal protein S20-1 [Jatropha curcas]
20 Hb_017711_010 0.1461316446 - - PREDICTED: mitochondrial import receptor subunit TOM9-2 [Jatropha curcas]

Gene co-expression network

sample Hb_033448_010 Hb_033448_010 Hb_000563_530 Hb_000563_530 Hb_033448_010--Hb_000563_530 Hb_000369_090 Hb_000369_090 Hb_033448_010--Hb_000369_090 Hb_000184_120 Hb_000184_120 Hb_033448_010--Hb_000184_120 Hb_002200_120 Hb_002200_120 Hb_033448_010--Hb_002200_120 Hb_000189_530 Hb_000189_530 Hb_033448_010--Hb_000189_530 Hb_000366_100 Hb_000366_100 Hb_033448_010--Hb_000366_100 Hb_000563_530--Hb_000184_120 Hb_000563_530--Hb_002200_120 Hb_077562_040 Hb_077562_040 Hb_000563_530--Hb_077562_040 Hb_000563_530--Hb_000369_090 Hb_000563_530--Hb_000366_100 Hb_000369_090--Hb_002200_120 Hb_000330_170 Hb_000330_170 Hb_000369_090--Hb_000330_170 Hb_000369_090--Hb_000184_120 Hb_180992_010 Hb_180992_010 Hb_000369_090--Hb_180992_010 Hb_000184_120--Hb_077562_040 Hb_000184_120--Hb_002200_120 Hb_004025_030 Hb_004025_030 Hb_000184_120--Hb_004025_030 Hb_002200_120--Hb_000330_170 Hb_000061_160 Hb_000061_160 Hb_002200_120--Hb_000061_160 Hb_001019_090 Hb_001019_090 Hb_000189_530--Hb_001019_090 Hb_000617_320 Hb_000617_320 Hb_000189_530--Hb_000617_320 Hb_000189_530--Hb_000366_100 Hb_000152_430 Hb_000152_430 Hb_000189_530--Hb_000152_430 Hb_007166_050 Hb_007166_050 Hb_000189_530--Hb_007166_050 Hb_000193_350 Hb_000193_350 Hb_000189_530--Hb_000193_350 Hb_036369_010 Hb_036369_010 Hb_000366_100--Hb_036369_010 Hb_023675_010 Hb_023675_010 Hb_000366_100--Hb_023675_010 Hb_000752_060 Hb_000752_060 Hb_000366_100--Hb_000752_060 Hb_000366_100--Hb_000617_320 Hb_008016_010 Hb_008016_010 Hb_000366_100--Hb_008016_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.7223 1.87134 1.22167 3.34969 36.4374 73.8421
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.4589 57.7248 24.3195 6.99357 1.83481

CAGE analysis