Hb_033491_010

Information

Type -
Description -
Location Contig33491: 61-946
Sequence    

Annotation

kegg
ID rcu:RCOM_1197150
description Phosphatidylinositol N-acetylglucosaminyltransferase subunit C, putative (EC:2.4.1.198)
nr
ID XP_002528159.1
description Phosphatidylinositol N-acetylglucosaminyltransferase subunit C, putative [Ricinus communis]
swissprot
ID Q54M40
description Putative phosphatidylinositol N-acetylglucosaminyltransferase subunit C OS=Dictyostelium discoideum GN=pigC PE=3 SV=1
trembl
ID B9SQ90
description Phosphatidylinositol N-acetylglucosaminyltransferase subunit C, putative OS=Ricinus communis GN=RCOM_1197150 PE=4 SV=1
Gene Ontology
ID GO:0000506
description phosphatidylinositol n-acetylglucosaminyltransferase subunit c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35091: 1-2691
cDNA
(Sanger)
(ID:Location)		 021_P21.ab1: 519-2666

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033491_010 0.0 - - Phosphatidylinositol N-acetylglucosaminyltransferase subunit C, putative [Ricinus communis]
2 Hb_001369_060 0.054996334 - - PREDICTED: uncharacterized Rho GTPase-activating protein At5g61530 [Jatropha curcas]
3 Hb_000732_260 0.0597815571 - - PREDICTED: telomerase Cajal body protein 1 [Jatropha curcas]
4 Hb_000272_100 0.063222205 - - PREDICTED: uncharacterized protein LOC103949110 [Pyrus x bretschneideri]
5 Hb_000282_060 0.0658848527 - - PREDICTED: uncharacterized protein LOC105638155 [Jatropha curcas]
6 Hb_000784_090 0.068078052 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Jatropha curcas]
7 Hb_002215_050 0.0724235724 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
8 Hb_002400_220 0.0757768107 - - Vesicle-associated membrane protein, putative [Ricinus communis]
9 Hb_000365_360 0.0769338024 - - PREDICTED: RING finger and transmembrane domain-containing protein 2 isoform X1 [Jatropha curcas]
10 Hb_003728_020 0.077043268 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002249_140 0.0784967977 - - PREDICTED: uncharacterized protein LOC105648715 [Jatropha curcas]
12 Hb_159558_030 0.0786023096 - - ubiquitin-conjugating enzyme E2 variant 1D [Jatropha curcas]
13 Hb_001811_150 0.0788916896 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 28-like isoform X2 [Jatropha curcas]
14 Hb_027892_060 0.0797357147 - - PREDICTED: inter-alpha-trypsin inhibitor heavy chain H3 isoform X1 [Jatropha curcas]
15 Hb_006447_010 0.0798008553 - - PREDICTED: peroxisome biogenesis protein 22 [Jatropha curcas]
16 Hb_098709_010 0.0819649803 - - PREDICTED: protein argonaute 1 [Jatropha curcas]
17 Hb_118977_020 0.0821306481 - - PREDICTED: uncharacterized protein At3g03773 [Jatropha curcas]
18 Hb_000359_170 0.0822629039 - - hypothetical protein CISIN_1g014750mg [Citrus sinensis]
19 Hb_006569_020 0.0835481372 - - hypothetical protein POPTR_0010s22990g [Populus trichocarpa]
20 Hb_001030_120 0.0836052994 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]

Gene co-expression network

sample Hb_033491_010 Hb_033491_010 Hb_001369_060 Hb_001369_060 Hb_033491_010--Hb_001369_060 Hb_000732_260 Hb_000732_260 Hb_033491_010--Hb_000732_260 Hb_000272_100 Hb_000272_100 Hb_033491_010--Hb_000272_100 Hb_000282_060 Hb_000282_060 Hb_033491_010--Hb_000282_060 Hb_000784_090 Hb_000784_090 Hb_033491_010--Hb_000784_090 Hb_002215_050 Hb_002215_050 Hb_033491_010--Hb_002215_050 Hb_001369_060--Hb_002215_050 Hb_000365_360 Hb_000365_360 Hb_001369_060--Hb_000365_360 Hb_001804_060 Hb_001804_060 Hb_001369_060--Hb_001804_060 Hb_003638_140 Hb_003638_140 Hb_001369_060--Hb_003638_140 Hb_098709_010 Hb_098709_010 Hb_001369_060--Hb_098709_010 Hb_000732_260--Hb_000282_060 Hb_002249_140 Hb_002249_140 Hb_000732_260--Hb_002249_140 Hb_000732_260--Hb_000272_100 Hb_001269_150 Hb_001269_150 Hb_000732_260--Hb_001269_150 Hb_001811_150 Hb_001811_150 Hb_000732_260--Hb_001811_150 Hb_159558_030 Hb_159558_030 Hb_000272_100--Hb_159558_030 Hb_003086_110 Hb_003086_110 Hb_000272_100--Hb_003086_110 Hb_003086_020 Hb_003086_020 Hb_000272_100--Hb_003086_020 Hb_004607_140 Hb_004607_140 Hb_000272_100--Hb_004607_140 Hb_006569_020 Hb_006569_020 Hb_000282_060--Hb_006569_020 Hb_118977_020 Hb_118977_020 Hb_000282_060--Hb_118977_020 Hb_000282_060--Hb_000784_090 Hb_001493_100 Hb_001493_100 Hb_000282_060--Hb_001493_100 Hb_000481_010 Hb_000481_010 Hb_000784_090--Hb_000481_010 Hb_000784_090--Hb_002215_050 Hb_000784_090--Hb_002249_140 Hb_000784_090--Hb_001493_100 Hb_000784_090--Hb_001369_060 Hb_002215_050--Hb_003638_140 Hb_001214_130 Hb_001214_130 Hb_002215_050--Hb_001214_130 Hb_024714_030 Hb_024714_030 Hb_002215_050--Hb_024714_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
157.114 43.9098 18.7022 28.45 143.846 170.704
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
173.037 102.683 103.346 37.3867 18.856

CAGE analysis