Hb_033554_020

Information

Type transcription factor
Description TF Family: BES1
Location Contig33554: 27659-44389
Sequence    

Annotation

kegg
ID pop:POPTR_0003s10570g
description POPTRDRAFT_852887; hypothetical protein
nr
ID XP_012083880.1
description PREDICTED: beta-amylase 8 [Jatropha curcas]
swissprot
ID Q9FH80
description Beta-amylase 8 OS=Arabidopsis thaliana GN=BAM8 PE=2 SV=1
trembl
ID A0A067JVR7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19469 PE=3 SV=1
Gene Ontology
ID GO:0005634
description beta-amylase 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35118: 27696-28358 , PASA_asmbl_35119: 28374-32694 , PASA_asmbl_35121: 33414-44206 , PASA_asmbl_35123: 40399-40762
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033554_020 0.0 transcription factor TF Family: BES1 PREDICTED: beta-amylase 8 [Jatropha curcas]
2 Hb_001373_160 0.0807926798 - - hypothetical protein JCGZ_16907 [Jatropha curcas]
3 Hb_000243_130 0.0832481311 - - hypothetical protein M569_10795, partial [Genlisea aurea]
4 Hb_006618_090 0.091173771 - - PREDICTED: FAM10 family protein At4g22670 [Jatropha curcas]
5 Hb_000102_050 0.0958174359 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
6 Hb_000994_020 0.0960174823 - - methylenetetrahydrofolate dehydrogenase, putative [Ricinus communis]
7 Hb_006501_010 0.102143633 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A isoform X1 [Populus euphratica]
8 Hb_000302_170 0.102591271 - - PREDICTED: dnaJ protein ERDJ2A-like [Jatropha curcas]
9 Hb_000184_150 0.1028745754 - - PREDICTED: U-box domain-containing protein 15 [Jatropha curcas]
10 Hb_002890_100 0.1031080723 - - PREDICTED: mitotic spindle checkpoint protein MAD1 isoform X1 [Jatropha curcas]
11 Hb_001047_200 0.1036678064 - - PREDICTED: pre-mRNA-splicing factor 18 [Eucalyptus grandis]
12 Hb_015026_100 0.1054343788 - - PREDICTED: transmembrane protein 184C-like [Jatropha curcas]
13 Hb_002092_070 0.1067447324 - - PREDICTED: aluminum-activated malate transporter 9-like [Jatropha curcas]
14 Hb_000030_060 0.107441029 - - PREDICTED: T-complex protein 1 subunit theta [Jatropha curcas]
15 Hb_001723_140 0.1081878768 - - PREDICTED: importin beta-like SAD2 homolog isoform X2 [Jatropha curcas]
16 Hb_005323_010 0.10873169 - - PREDICTED: uncharacterized protein LOC105642810 [Jatropha curcas]
17 Hb_044486_040 0.110156819 - - PREDICTED: ion channel CASTOR-like [Malus domestica]
18 Hb_000523_080 0.1102792488 - - PREDICTED: LOW QUALITY PROTEIN: beta-catenin-like protein 1 [Jatropha curcas]
19 Hb_001221_090 0.1103284498 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]
20 Hb_000134_250 0.1105408255 - - protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_033554_020 Hb_033554_020 Hb_001373_160 Hb_001373_160 Hb_033554_020--Hb_001373_160 Hb_000243_130 Hb_000243_130 Hb_033554_020--Hb_000243_130 Hb_006618_090 Hb_006618_090 Hb_033554_020--Hb_006618_090 Hb_000102_050 Hb_000102_050 Hb_033554_020--Hb_000102_050 Hb_000994_020 Hb_000994_020 Hb_033554_020--Hb_000994_020 Hb_006501_010 Hb_006501_010 Hb_033554_020--Hb_006501_010 Hb_000134_250 Hb_000134_250 Hb_001373_160--Hb_000134_250 Hb_012940_040 Hb_012940_040 Hb_001373_160--Hb_012940_040 Hb_004724_370 Hb_004724_370 Hb_001373_160--Hb_004724_370 Hb_001171_030 Hb_001171_030 Hb_001373_160--Hb_001171_030 Hb_010287_030 Hb_010287_030 Hb_001373_160--Hb_010287_030 Hb_044486_040 Hb_044486_040 Hb_000243_130--Hb_044486_040 Hb_007894_160 Hb_007894_160 Hb_000243_130--Hb_007894_160 Hb_004064_050 Hb_004064_050 Hb_000243_130--Hb_004064_050 Hb_002475_040 Hb_002475_040 Hb_000243_130--Hb_002475_040 Hb_009486_080 Hb_009486_080 Hb_000243_130--Hb_009486_080 Hb_009771_110 Hb_009771_110 Hb_006618_090--Hb_009771_110 Hb_005053_010 Hb_005053_010 Hb_006618_090--Hb_005053_010 Hb_002686_040 Hb_002686_040 Hb_006618_090--Hb_002686_040 Hb_007929_080 Hb_007929_080 Hb_006618_090--Hb_007929_080 Hb_000523_080 Hb_000523_080 Hb_006618_090--Hb_000523_080 Hb_000261_030 Hb_000261_030 Hb_006618_090--Hb_000261_030 Hb_102438_030 Hb_102438_030 Hb_000102_050--Hb_102438_030 Hb_004032_230 Hb_004032_230 Hb_000102_050--Hb_004032_230 Hb_000340_030 Hb_000340_030 Hb_000102_050--Hb_000340_030 Hb_000529_060 Hb_000529_060 Hb_000102_050--Hb_000529_060 Hb_005333_140 Hb_005333_140 Hb_000102_050--Hb_005333_140 Hb_000302_170 Hb_000302_170 Hb_000102_050--Hb_000302_170 Hb_015026_100 Hb_015026_100 Hb_000994_020--Hb_015026_100 Hb_000046_600 Hb_000046_600 Hb_000994_020--Hb_000046_600 Hb_000260_770 Hb_000260_770 Hb_000994_020--Hb_000260_770 Hb_000994_020--Hb_006501_010 Hb_000994_020--Hb_000302_170 Hb_000300_550 Hb_000300_550 Hb_000994_020--Hb_000300_550 Hb_000082_010 Hb_000082_010 Hb_006501_010--Hb_000082_010 Hb_005723_020 Hb_005723_020 Hb_006501_010--Hb_005723_020 Hb_006501_010--Hb_015026_100 Hb_007413_040 Hb_007413_040 Hb_006501_010--Hb_007413_040 Hb_006501_010--Hb_002686_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.80377 11.8391 12.8989 7.06772 12.4193 7.40218
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.61182 2.42372 2.10682 11.8157 6.56523

CAGE analysis