Hb_033594_070

Information

Type -
Description -
Location Contig33594: 48804-51519
Sequence    

Annotation

kegg
ID tcc:TCM_000814
description hypothetical protein
nr
ID XP_012469646.1
description PREDICTED: uncharacterized protein LOC105787685 isoform X1 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2QML8
description Gossypium raimondii chromosome 3, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_003G031100 PE=4 SV=1
Gene Ontology
ID GO:0005874
description duf4228 domain protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35131: 48383-51523 , PASA_asmbl_35132: 49637-49976
cDNA
(Sanger)
(ID:Location)		 019_G04.ab1: 48383-49166

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033594_070 0.0 - - PREDICTED: uncharacterized protein LOC105787685 isoform X1 [Gossypium raimondii]
2 Hb_000566_020 0.1599256636 - - hypothetical protein POPTR_0001s13520g [Populus trichocarpa]
3 Hb_001529_070 0.2194976451 transcription factor TF Family: AP2 hypothetical protein POPTR_0018s09900g [Populus trichocarpa]
4 Hb_014834_010 0.2393632657 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT4 [Jatropha curcas]
5 Hb_002081_170 0.2418212488 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
6 Hb_003581_300 0.2459725826 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105630404 isoform X1 [Jatropha curcas]
7 Hb_004102_030 0.2608039882 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
8 Hb_011379_010 0.2669962436 - - Thylakoid lumenal 25.6 kDa protein, chloroplast precursor, putative [Ricinus communis]
9 Hb_003120_100 0.270532089 - - PREDICTED: GDSL esterase/lipase EXL3-like [Jatropha curcas]
10 Hb_007386_010 0.2747128151 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
11 Hb_000032_050 0.2821105078 - - hypothetical protein RCOM_1691130 [Ricinus communis]
12 Hb_004200_030 0.2834314794 - - PREDICTED: SWR1 complex subunit 6-like isoform X1 [Citrus sinensis]
13 Hb_000809_060 0.2844026955 transcription factor TF Family: LOB LOB domain-containing 36 -like protein [Gossypium arboreum]
14 Hb_168326_010 0.2844858016 - - PREDICTED: alpha-L-fucosidase 2-like isoform X2 [Populus euphratica]
15 Hb_000173_050 0.286633035 - - basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
16 Hb_005144_070 0.287290371 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000008_360 0.2873418792 - - hypothetical protein POPTR_0004s22050g [Populus trichocarpa]
18 Hb_003362_080 0.2889488313 - - beta-galactosidase, putative [Ricinus communis]
19 Hb_021906_010 0.2945640017 - - PREDICTED: cysteine proteinase inhibitor-like [Populus euphratica]
20 Hb_004162_260 0.2945681181 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_033594_070 Hb_033594_070 Hb_000566_020 Hb_000566_020 Hb_033594_070--Hb_000566_020 Hb_001529_070 Hb_001529_070 Hb_033594_070--Hb_001529_070 Hb_014834_010 Hb_014834_010 Hb_033594_070--Hb_014834_010 Hb_002081_170 Hb_002081_170 Hb_033594_070--Hb_002081_170 Hb_003581_300 Hb_003581_300 Hb_033594_070--Hb_003581_300 Hb_004102_030 Hb_004102_030 Hb_033594_070--Hb_004102_030 Hb_000566_020--Hb_003581_300 Hb_001936_140 Hb_001936_140 Hb_000566_020--Hb_001936_140 Hb_107504_010 Hb_107504_010 Hb_000566_020--Hb_107504_010 Hb_000566_020--Hb_014834_010 Hb_054074_010 Hb_054074_010 Hb_000566_020--Hb_054074_010 Hb_000175_580 Hb_000175_580 Hb_001529_070--Hb_000175_580 Hb_001529_070--Hb_002081_170 Hb_001529_070--Hb_004102_030 Hb_007386_010 Hb_007386_010 Hb_001529_070--Hb_007386_010 Hb_032974_010 Hb_032974_010 Hb_001529_070--Hb_032974_010 Hb_011379_010 Hb_011379_010 Hb_014834_010--Hb_011379_010 Hb_004162_260 Hb_004162_260 Hb_014834_010--Hb_004162_260 Hb_000914_170 Hb_000914_170 Hb_014834_010--Hb_000914_170 Hb_000676_340 Hb_000676_340 Hb_014834_010--Hb_000676_340 Hb_000049_110 Hb_000049_110 Hb_014834_010--Hb_000049_110 Hb_001045_040 Hb_001045_040 Hb_014834_010--Hb_001045_040 Hb_044555_010 Hb_044555_010 Hb_002081_170--Hb_044555_010 Hb_004200_030 Hb_004200_030 Hb_002081_170--Hb_004200_030 Hb_004097_040 Hb_004097_040 Hb_002081_170--Hb_004097_040 Hb_001563_020 Hb_001563_020 Hb_002081_170--Hb_001563_020 Hb_002081_170--Hb_007386_010 Hb_006018_060 Hb_006018_060 Hb_003581_300--Hb_006018_060 Hb_015430_010 Hb_015430_010 Hb_003581_300--Hb_015430_010 Hb_003581_300--Hb_054074_010 Hb_002260_030 Hb_002260_030 Hb_003581_300--Hb_002260_030 Hb_002157_040 Hb_002157_040 Hb_003581_300--Hb_002157_040 Hb_000030_200 Hb_000030_200 Hb_003581_300--Hb_000030_200 Hb_009976_010 Hb_009976_010 Hb_004102_030--Hb_009976_010 Hb_000612_040 Hb_000612_040 Hb_004102_030--Hb_000612_040 Hb_084889_010 Hb_084889_010 Hb_004102_030--Hb_084889_010 Hb_004102_030--Hb_032974_010 Hb_000275_130 Hb_000275_130 Hb_004102_030--Hb_000275_130 Hb_148891_010 Hb_148891_010 Hb_004102_030--Hb_148891_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.24975 0.584121 36.9475 43.2622 0.557031 5.04521
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
119.956 47.0267 7.9479 0.908554 8.37946

CAGE analysis