Hb_033594_080

Information

Type -
Description -
Location Contig33594: 54309-63588
Sequence    

Annotation

kegg
ID rcu:RCOM_0581020
description hypothetical protein
nr
ID XP_012079588.1
description PREDICTED: uncharacterized protein LOC105639993 [Jatropha curcas]
swissprot
ID A7MBC7
description Transmembrane protein 194A OS=Bos taurus GN=TMEM194A PE=2 SV=1
trembl
ID A0A067KAP3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12549 PE=4 SV=1
Gene Ontology
ID GO:0016021
description transmembrane protein 194a isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35134: 55239-60167 , PASA_asmbl_35135: 62248-63119
cDNA
(Sanger)
(ID:Location)		 007_N17.ab1: 62347-63119 , 028_G02.ab1: 62392-63062

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033594_080 0.0 - - PREDICTED: uncharacterized protein LOC105639993 [Jatropha curcas]
2 Hb_000890_150 0.0561438237 - - PREDICTED: E3 ubiquitin-protein ligase Topors isoform X1 [Jatropha curcas]
3 Hb_000359_060 0.060922179 - - PREDICTED: WD repeat-containing protein 26-like [Jatropha curcas]
4 Hb_000220_100 0.0731513851 - - PREDICTED: uncharacterized PKHD-type hydroxylase At1g22950 [Jatropha curcas]
5 Hb_002045_070 0.0743465517 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]
6 Hb_000215_320 0.0770571837 - - phosphofructokinase [Hevea brasiliensis]
7 Hb_004108_220 0.0824489933 - - PREDICTED: mRNA-capping enzyme-like isoform X1 [Jatropha curcas]
8 Hb_000173_410 0.0827980029 - - PREDICTED: BI1-like protein [Jatropha curcas]
9 Hb_000487_270 0.0829414882 - - hypothetical protein JCGZ_22651 [Jatropha curcas]
10 Hb_011218_090 0.0877479125 - - PREDICTED: autophagy-related protein 18a [Jatropha curcas]
11 Hb_004990_010 0.0879447596 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 [Jatropha curcas]
12 Hb_000574_450 0.0896684105 - - PREDICTED: signal recognition particle 54 kDa protein 2 [Jatropha curcas]
13 Hb_149985_010 0.0898386512 - - PREDICTED: transcription initiation factor IIB-2 [Cucumis sativus]
14 Hb_168978_010 0.0900886862 - - PREDICTED: uncharacterized protein LOC105630751 [Jatropha curcas]
15 Hb_094836_010 0.0911340536 - - PREDICTED: uncharacterized protein LOC105638026 [Jatropha curcas]
16 Hb_000608_050 0.0920890182 - - PREDICTED: GDT1-like protein 4 [Jatropha curcas]
17 Hb_017387_010 0.0924375667 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]
18 Hb_000856_010 0.0940669591 - - PREDICTED: uncharacterized protein LOC105640466 [Jatropha curcas]
19 Hb_004078_040 0.0941915789 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 [Jatropha curcas]
20 Hb_001278_100 0.0951356935 - - PREDICTED: probable phosphopantothenoylcysteine decarboxylase [Jatropha curcas]

Gene co-expression network

sample Hb_033594_080 Hb_033594_080 Hb_000890_150 Hb_000890_150 Hb_033594_080--Hb_000890_150 Hb_000359_060 Hb_000359_060 Hb_033594_080--Hb_000359_060 Hb_000220_100 Hb_000220_100 Hb_033594_080--Hb_000220_100 Hb_002045_070 Hb_002045_070 Hb_033594_080--Hb_002045_070 Hb_000215_320 Hb_000215_320 Hb_033594_080--Hb_000215_320 Hb_004108_220 Hb_004108_220 Hb_033594_080--Hb_004108_220 Hb_000890_150--Hb_000359_060 Hb_011218_090 Hb_011218_090 Hb_000890_150--Hb_011218_090 Hb_000049_210 Hb_000049_210 Hb_000890_150--Hb_000049_210 Hb_000787_020 Hb_000787_020 Hb_000890_150--Hb_000787_020 Hb_004078_040 Hb_004078_040 Hb_000890_150--Hb_004078_040 Hb_000359_060--Hb_000220_100 Hb_000359_060--Hb_011218_090 Hb_149985_010 Hb_149985_010 Hb_000359_060--Hb_149985_010 Hb_168978_010 Hb_168978_010 Hb_000359_060--Hb_168978_010 Hb_000173_410 Hb_000173_410 Hb_000359_060--Hb_000173_410 Hb_000220_100--Hb_000173_410 Hb_000220_100--Hb_002045_070 Hb_000608_050 Hb_000608_050 Hb_000220_100--Hb_000608_050 Hb_000454_090 Hb_000454_090 Hb_000220_100--Hb_000454_090 Hb_002301_160 Hb_002301_160 Hb_002045_070--Hb_002301_160 Hb_002045_070--Hb_004108_220 Hb_000749_050 Hb_000749_050 Hb_002045_070--Hb_000749_050 Hb_000009_290 Hb_000009_290 Hb_002045_070--Hb_000009_290 Hb_000215_320--Hb_000890_150 Hb_004117_110 Hb_004117_110 Hb_000215_320--Hb_004117_110 Hb_000538_230 Hb_000538_230 Hb_000215_320--Hb_000538_230 Hb_000215_320--Hb_000749_050 Hb_017387_010 Hb_017387_010 Hb_000215_320--Hb_017387_010 Hb_002301_150 Hb_002301_150 Hb_004108_220--Hb_002301_150 Hb_005588_060 Hb_005588_060 Hb_004108_220--Hb_005588_060 Hb_004108_220--Hb_149985_010 Hb_004108_220--Hb_168978_010 Hb_000365_270 Hb_000365_270 Hb_004108_220--Hb_000365_270 Hb_012022_040 Hb_012022_040 Hb_004108_220--Hb_012022_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.08364 7.51251 6.64534 12.8155 4.25579 5.86365
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.18237 9.51734 9.38202 7.77189 5.31496

CAGE analysis