Hb_033594_120

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig33594: 91693-96989
Sequence    

Annotation

kegg
ID rcu:RCOM_0580970
description Histone H1.1, putative
nr
ID XP_012079422.1
description PREDICTED: telomere repeat-binding factor 2 [Jatropha curcas]
swissprot
ID Q9FJW5
description Telomere repeat-binding factor 2 OS=Arabidopsis thaliana GN=TRB2 PE=1 SV=1
trembl
ID A0A067KJS3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12545 PE=4 SV=1
Gene Ontology
ID GO:0000786
description homeodomain-like winged-helix dna-binding family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35146: 91822-96901
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033594_120 0.0 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 2 [Jatropha curcas]
2 Hb_003633_030 0.060724239 - - f-actin capping protein alpha, putative [Ricinus communis]
3 Hb_001252_130 0.0701849786 - - PREDICTED: protein YIPF1 homolog [Jatropha curcas]
4 Hb_000421_220 0.0710605975 - - PREDICTED: tRNA-splicing endonuclease subunit Sen2-1-like isoform X2 [Jatropha curcas]
5 Hb_000054_090 0.0720720663 - - zinc finger protein, putative [Ricinus communis]
6 Hb_000960_060 0.0740114049 - - PREDICTED: ADP-ribosylation factor 1-like 2 [Jatropha curcas]
7 Hb_002473_130 0.0750703982 - - PREDICTED: THO complex subunit 3 isoform X1 [Jatropha curcas]
8 Hb_001828_190 0.0752421328 - - PREDICTED: phosducin-like protein 3 [Prunus mume]
9 Hb_007672_060 0.0753459729 transcription factor TF Family: SWI/SNF-BAF60b Upstream activation factor subunit UAF30, putative [Ricinus communis]
10 Hb_005731_050 0.0784622194 - - hypothetical protein JCGZ_26820 [Jatropha curcas]
11 Hb_012799_160 0.0785826483 - - PREDICTED: ADP-ribosylation factor-related protein 1-like [Jatropha curcas]
12 Hb_001579_270 0.0793825435 - - PREDICTED: phosphatidylinositol 3-kinase, root isoform isoform X1 [Jatropha curcas]
13 Hb_143398_010 0.0794004101 - - PREDICTED: peter Pan-like protein [Jatropha curcas]
14 Hb_000599_300 0.079741196 - - PREDICTED: TBC1 domain family member 15-like [Jatropha curcas]
15 Hb_002271_020 0.0797526834 - - hypothetical protein EUGRSUZ_G02641 [Eucalyptus grandis]
16 Hb_003125_010 0.080794057 - - PREDICTED: uncharacterized protein LOC105640205 [Jatropha curcas]
17 Hb_008406_190 0.0821790708 - - PREDICTED: RNA polymerase II subunit 5-mediating protein homolog isoform X2 [Jatropha curcas]
18 Hb_007017_030 0.0833284421 - - PREDICTED: uncharacterized protein LOC105649812 isoform X1 [Jatropha curcas]
19 Hb_002890_140 0.0835524119 - - PREDICTED: uncharacterized protein LOC100263805 [Vitis vinifera]
20 Hb_001287_080 0.0835990781 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_033594_120 Hb_033594_120 Hb_003633_030 Hb_003633_030 Hb_033594_120--Hb_003633_030 Hb_001252_130 Hb_001252_130 Hb_033594_120--Hb_001252_130 Hb_000421_220 Hb_000421_220 Hb_033594_120--Hb_000421_220 Hb_000054_090 Hb_000054_090 Hb_033594_120--Hb_000054_090 Hb_000960_060 Hb_000960_060 Hb_033594_120--Hb_000960_060 Hb_002473_130 Hb_002473_130 Hb_033594_120--Hb_002473_130 Hb_000599_300 Hb_000599_300 Hb_003633_030--Hb_000599_300 Hb_007017_030 Hb_007017_030 Hb_003633_030--Hb_007017_030 Hb_002893_080 Hb_002893_080 Hb_003633_030--Hb_002893_080 Hb_003633_030--Hb_000421_220 Hb_001279_150 Hb_001279_150 Hb_003633_030--Hb_001279_150 Hb_005496_140 Hb_005496_140 Hb_001252_130--Hb_005496_140 Hb_000081_160 Hb_000081_160 Hb_001252_130--Hb_000081_160 Hb_001971_010 Hb_001971_010 Hb_001252_130--Hb_001971_010 Hb_000599_250 Hb_000599_250 Hb_001252_130--Hb_000599_250 Hb_000215_110 Hb_000215_110 Hb_001252_130--Hb_000215_110 Hb_001252_130--Hb_000054_090 Hb_002183_060 Hb_002183_060 Hb_000421_220--Hb_002183_060 Hb_008453_030 Hb_008453_030 Hb_000421_220--Hb_008453_030 Hb_004934_100 Hb_004934_100 Hb_000421_220--Hb_004934_100 Hb_025240_040 Hb_025240_040 Hb_000421_220--Hb_025240_040 Hb_001234_100 Hb_001234_100 Hb_000421_220--Hb_001234_100 Hb_015934_070 Hb_015934_070 Hb_000421_220--Hb_015934_070 Hb_007672_060 Hb_007672_060 Hb_000054_090--Hb_007672_060 Hb_000054_090--Hb_007017_030 Hb_000054_090--Hb_000081_160 Hb_000054_090--Hb_001971_010 Hb_000173_290 Hb_000173_290 Hb_000054_090--Hb_000173_290 Hb_005731_050 Hb_005731_050 Hb_000960_060--Hb_005731_050 Hb_003428_030 Hb_003428_030 Hb_000960_060--Hb_003428_030 Hb_001828_190 Hb_001828_190 Hb_000960_060--Hb_001828_190 Hb_028227_020 Hb_028227_020 Hb_000960_060--Hb_028227_020 Hb_000093_160 Hb_000093_160 Hb_000960_060--Hb_000093_160 Hb_002271_020 Hb_002271_020 Hb_002473_130--Hb_002271_020 Hb_003226_140 Hb_003226_140 Hb_002473_130--Hb_003226_140 Hb_143398_010 Hb_143398_010 Hb_002473_130--Hb_143398_010 Hb_005291_030 Hb_005291_030 Hb_002473_130--Hb_005291_030 Hb_002473_130--Hb_001279_150 Hb_005489_060 Hb_005489_060 Hb_002473_130--Hb_005489_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.63092 5.12537 5.49698 11.6848 10.097 15.6826
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.7253 17.7061 9.53463 7.345 8.89371

CAGE analysis