Hb_033594_130

Information

Type -
Description -
Location Contig33594: 98542-98784
Sequence    

Annotation

kegg
ID vvi:100260435
description 50S ribosomal protein L12, chloroplastic-like
nr
ID XP_012079421.1
description PREDICTED: 50S ribosomal protein L12, cyanelle-like [Jatropha curcas]
swissprot
ID Q9L5W4
description 50S ribosomal protein L7/L12 OS=Liberibacter africanus subsp. capensis GN=rplL PE=3 SV=1
trembl
ID A0A067KAN8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12544 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 50s ribosomal protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033594_130 0.0 - - PREDICTED: 50S ribosomal protein L12, cyanelle-like [Jatropha curcas]
2 Hb_001842_070 0.0971018141 - - PREDICTED: uncharacterized protein LOC105637106 [Jatropha curcas]
3 Hb_029510_140 0.1240578644 - - PREDICTED: uncharacterized protein LOC105635017 [Jatropha curcas]
4 Hb_006130_010 0.1253144592 - - PREDICTED: CTP synthase [Jatropha curcas]
5 Hb_063134_010 0.1258800234 transcription factor TF Family: SET histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
6 Hb_006472_010 0.1259608993 - - hypothetical protein CICLE_v10028249mg [Citrus clementina]
7 Hb_001855_010 0.1284913065 - - PREDICTED: uncharacterized protein KIAA0930 homolog isoform X2 [Jatropha curcas]
8 Hb_022092_090 0.1288568027 - - PREDICTED: uncharacterized protein LOC105646975 [Jatropha curcas]
9 Hb_073171_110 0.1306307449 - - PREDICTED: lysM domain receptor-like kinase 3 [Jatropha curcas]
10 Hb_005754_060 0.1315608455 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000023_140 0.1393030349 - - PREDICTED: cadmium-induced protein AS8 isoform X1 [Jatropha curcas]
12 Hb_001135_160 0.1397599154 - - PREDICTED: elongator complex protein 6 [Jatropha curcas]
13 Hb_008453_150 0.1429227513 - - PREDICTED: uncharacterized protein LOC105635307 isoform X2 [Jatropha curcas]
14 Hb_009048_040 0.1434078578 - - PREDICTED: uncharacterized protein LOC105641407 [Jatropha curcas]
15 Hb_036034_010 0.1440311326 - - conserved hypothetical protein [Ricinus communis]
16 Hb_008085_030 0.1443084276 - - PREDICTED: uncharacterized protein LOC105639414 [Jatropha curcas]
17 Hb_011310_070 0.144535662 - - ADP,ATP carrier protein, putative [Ricinus communis]
18 Hb_011224_080 0.1453797465 - - PREDICTED: coiled-coil domain-containing protein 22 homolog isoform X1 [Jatropha curcas]
19 Hb_000576_030 0.1470487728 - - PREDICTED: pentatricopeptide repeat-containing protein At2g20540 [Jatropha curcas]
20 Hb_000172_370 0.1477768402 - - -

Gene co-expression network

sample Hb_033594_130 Hb_033594_130 Hb_001842_070 Hb_001842_070 Hb_033594_130--Hb_001842_070 Hb_029510_140 Hb_029510_140 Hb_033594_130--Hb_029510_140 Hb_006130_010 Hb_006130_010 Hb_033594_130--Hb_006130_010 Hb_063134_010 Hb_063134_010 Hb_033594_130--Hb_063134_010 Hb_006472_010 Hb_006472_010 Hb_033594_130--Hb_006472_010 Hb_001855_010 Hb_001855_010 Hb_033594_130--Hb_001855_010 Hb_007760_030 Hb_007760_030 Hb_001842_070--Hb_007760_030 Hb_011224_080 Hb_011224_080 Hb_001842_070--Hb_011224_080 Hb_000317_430 Hb_000317_430 Hb_001842_070--Hb_000317_430 Hb_000365_360 Hb_000365_360 Hb_001842_070--Hb_000365_360 Hb_001842_070--Hb_063134_010 Hb_006693_030 Hb_006693_030 Hb_001842_070--Hb_006693_030 Hb_000175_070 Hb_000175_070 Hb_029510_140--Hb_000175_070 Hb_007193_100 Hb_007193_100 Hb_029510_140--Hb_007193_100 Hb_029510_140--Hb_063134_010 Hb_001518_040 Hb_001518_040 Hb_029510_140--Hb_001518_040 Hb_003005_020 Hb_003005_020 Hb_029510_140--Hb_003005_020 Hb_010436_070 Hb_010436_070 Hb_029510_140--Hb_010436_070 Hb_001832_190 Hb_001832_190 Hb_006130_010--Hb_001832_190 Hb_014720_160 Hb_014720_160 Hb_006130_010--Hb_014720_160 Hb_000922_330 Hb_000922_330 Hb_006130_010--Hb_000922_330 Hb_006130_010--Hb_001855_010 Hb_005754_060 Hb_005754_060 Hb_006130_010--Hb_005754_060 Hb_073171_110 Hb_073171_110 Hb_006130_010--Hb_073171_110 Hb_063134_010--Hb_007193_100 Hb_063134_010--Hb_003005_020 Hb_063134_010--Hb_000175_070 Hb_000172_370 Hb_000172_370 Hb_063134_010--Hb_000172_370 Hb_000384_090 Hb_000384_090 Hb_063134_010--Hb_000384_090 Hb_009048_040 Hb_009048_040 Hb_006472_010--Hb_009048_040 Hb_000080_190 Hb_000080_190 Hb_006472_010--Hb_000080_190 Hb_007632_220 Hb_007632_220 Hb_006472_010--Hb_007632_220 Hb_085781_010 Hb_085781_010 Hb_006472_010--Hb_085781_010 Hb_006472_010--Hb_005754_060 Hb_004109_190 Hb_004109_190 Hb_006472_010--Hb_004109_190 Hb_001135_160 Hb_001135_160 Hb_001855_010--Hb_001135_160 Hb_000023_140 Hb_000023_140 Hb_001855_010--Hb_000023_140 Hb_014568_030 Hb_014568_030 Hb_001855_010--Hb_014568_030 Hb_005063_040 Hb_005063_040 Hb_001855_010--Hb_005063_040 Hb_001855_010--Hb_005754_060 Hb_071736_010 Hb_071736_010 Hb_001855_010--Hb_071736_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.8956 0.421106 3.9487 3.39733 18.4054 30.5843
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.9843 16.9161 18.3727 4.8727 8.71471

CAGE analysis