Hb_033623_010

Information

Type -
Description -
Location Contig33623: 8503-17573
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033623_010 0.0 - - -
2 Hb_004108_010 0.1119891217 - - -
3 Hb_041177_010 0.1737253682 - - PREDICTED: MLP-like protein 34 [Vitis vinifera]
4 Hb_189237_010 0.1772050877 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
5 Hb_144951_010 0.189674595 - - putative reverse transcriptase [Oryza sativa Japonica Group]
6 Hb_000684_340 0.2228365879 - - PREDICTED: L-ascorbate peroxidase 2, cytosolic [Pyrus x bretschneideri]
7 Hb_001081_040 0.2248934101 - - hypothetical protein MIMGU_mgv11b021166mg, partial [Erythranthe guttata]
8 Hb_000336_300 0.2262797411 - - -
9 Hb_005389_010 0.2289133651 - - hypothetical protein PRUPE_ppa016115mg [Prunus persica]
10 Hb_000994_010 0.2299667668 - - hypothetical protein JCGZ_13899 [Jatropha curcas]
11 Hb_000016_010 0.2392042471 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
12 Hb_008424_010 0.2396387166 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_008064_010 0.2424701663 - - PREDICTED: ubiquitin-like domain-containing CTD phosphatase 1 [Jatropha curcas]
14 Hb_172864_010 0.2478770293 - - PREDICTED: 3'-hydroxy-N-methyl-(S)-coclaurine 4'-O-methyltransferase-like [Jatropha curcas]
15 Hb_050495_010 0.2479420326 - - heat-shock protein, putative [Ricinus communis]
16 Hb_005432_050 0.2528933757 - - PREDICTED: uncharacterized protein LOC105772114 [Gossypium raimondii]
17 Hb_002928_070 0.2561655965 - - -
18 Hb_093432_020 0.2589449379 - - PREDICTED: QWRF motif-containing protein 3 [Jatropha curcas]
19 Hb_004352_020 0.2612158586 - - o-methyltransferase, putative [Ricinus communis]
20 Hb_000380_070 0.263440754 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_033623_010 Hb_033623_010 Hb_004108_010 Hb_004108_010 Hb_033623_010--Hb_004108_010 Hb_041177_010 Hb_041177_010 Hb_033623_010--Hb_041177_010 Hb_189237_010 Hb_189237_010 Hb_033623_010--Hb_189237_010 Hb_144951_010 Hb_144951_010 Hb_033623_010--Hb_144951_010 Hb_000684_340 Hb_000684_340 Hb_033623_010--Hb_000684_340 Hb_001081_040 Hb_001081_040 Hb_033623_010--Hb_001081_040 Hb_004108_010--Hb_189237_010 Hb_004108_010--Hb_144951_010 Hb_005389_010 Hb_005389_010 Hb_004108_010--Hb_005389_010 Hb_093432_020 Hb_093432_020 Hb_004108_010--Hb_093432_020 Hb_002928_070 Hb_002928_070 Hb_004108_010--Hb_002928_070 Hb_000994_010 Hb_000994_010 Hb_041177_010--Hb_000994_010 Hb_172864_010 Hb_172864_010 Hb_041177_010--Hb_172864_010 Hb_041177_010--Hb_001081_040 Hb_004352_020 Hb_004352_020 Hb_041177_010--Hb_004352_020 Hb_000380_070 Hb_000380_070 Hb_041177_010--Hb_000380_070 Hb_189237_010--Hb_005389_010 Hb_189237_010--Hb_144951_010 Hb_189237_010--Hb_041177_010 Hb_050495_010 Hb_050495_010 Hb_189237_010--Hb_050495_010 Hb_144951_010--Hb_005389_010 Hb_144951_010--Hb_050495_010 Hb_000359_110 Hb_000359_110 Hb_144951_010--Hb_000359_110 Hb_004846_170 Hb_004846_170 Hb_000684_340--Hb_004846_170 Hb_008064_010 Hb_008064_010 Hb_000684_340--Hb_008064_010 Hb_001269_560 Hb_001269_560 Hb_000684_340--Hb_001269_560 Hb_000684_340--Hb_002928_070 Hb_000684_340--Hb_144951_010 Hb_001081_040--Hb_000994_010 Hb_000336_300 Hb_000336_300 Hb_001081_040--Hb_000336_300 Hb_000016_010 Hb_000016_010 Hb_001081_040--Hb_000016_010 Hb_008424_010 Hb_008424_010 Hb_001081_040--Hb_008424_010 Hb_005432_050 Hb_005432_050 Hb_001081_040--Hb_005432_050 Hb_001066_020 Hb_001066_020 Hb_001081_040--Hb_001066_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0387237 2.36112 0 0 0.553117 0.275333
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis