Hb_033642_010

Information

Type -
Description -
Location Contig33642: 9893-14321
Sequence    

Annotation

kegg
ID rcu:RCOM_1003800
description hypothetical protein
nr
ID XP_012084209.1
description PREDICTED: protection of telomeres protein 1a-like isoform X2 [Jatropha curcas]
swissprot
ID Q56Y52
description Protection of telomeres protein 1a OS=Arabidopsis thaliana GN=POT1A PE=1 SV=1
trembl
ID A0A067JYX1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19093 PE=4 SV=1
Gene Ontology
ID GO:0000784
description protection of telomeres protein 1a-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35228: 9913-14297 , PASA_asmbl_35229: 12909-13639
cDNA
(Sanger)
(ID:Location)		 004_C16.ab1: 9913-11098 , 020_J11.ab1: 9913-11129

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033642_010 0.0 - - PREDICTED: protection of telomeres protein 1a-like isoform X2 [Jatropha curcas]
2 Hb_028872_140 0.053804935 - - PREDICTED: uncharacterized protein LOC105644767 isoform X1 [Jatropha curcas]
3 Hb_009111_050 0.0559693898 transcription factor TF Family: Jumonji PREDICTED: pentatricopeptide repeat-containing protein At5g06540 [Populus euphratica]
4 Hb_002030_030 0.0601883552 - - PREDICTED: GLABRA2 expression modulator [Jatropha curcas]
5 Hb_001720_050 0.0658678247 - - PREDICTED: ATPase family AAA domain-containing protein At1g05910 isoform X1 [Jatropha curcas]
6 Hb_000062_240 0.0698098839 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
7 Hb_003777_270 0.070221813 - - 60S ribosomal protein L3B [Hevea brasiliensis]
8 Hb_002079_010 0.0716892655 - - hypothetical protein POPTR_0001s01970g [Populus trichocarpa]
9 Hb_000032_570 0.0727427583 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KELP [Jatropha curcas]
10 Hb_002811_360 0.0738622203 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]
11 Hb_028639_060 0.0746671623 - - transporter, putative [Ricinus communis]
12 Hb_015306_020 0.0747175035 transcription factor TF Family: MYB-related PREDICTED: dnaJ homolog subfamily C member 2 [Jatropha curcas]
13 Hb_001030_120 0.0770375315 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
14 Hb_004724_200 0.077266692 - - PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]
15 Hb_003642_060 0.0776854386 - - hypothetical protein RCOM_1189860 [Ricinus communis]
16 Hb_185830_020 0.0782189159 - - ABC transporter family protein [Hevea brasiliensis]
17 Hb_004096_030 0.078921566 - - PREDICTED: KH domain-containing protein At4g18375-like isoform X1 [Jatropha curcas]
18 Hb_000103_180 0.0791110558 - - PREDICTED: stress-induced-phosphoprotein 1 [Jatropha curcas]
19 Hb_001454_140 0.079398421 - - protein arginine n-methyltransferase, putative [Ricinus communis]
20 Hb_000421_260 0.0794377169 - - PREDICTED: carbamoyl-phosphate synthase large chain, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_033642_010 Hb_033642_010 Hb_028872_140 Hb_028872_140 Hb_033642_010--Hb_028872_140 Hb_009111_050 Hb_009111_050 Hb_033642_010--Hb_009111_050 Hb_002030_030 Hb_002030_030 Hb_033642_010--Hb_002030_030 Hb_001720_050 Hb_001720_050 Hb_033642_010--Hb_001720_050 Hb_000062_240 Hb_000062_240 Hb_033642_010--Hb_000062_240 Hb_003777_270 Hb_003777_270 Hb_033642_010--Hb_003777_270 Hb_001454_210 Hb_001454_210 Hb_028872_140--Hb_001454_210 Hb_000398_180 Hb_000398_180 Hb_028872_140--Hb_000398_180 Hb_028872_140--Hb_009111_050 Hb_002811_360 Hb_002811_360 Hb_028872_140--Hb_002811_360 Hb_015306_020 Hb_015306_020 Hb_028872_140--Hb_015306_020 Hb_001030_120 Hb_001030_120 Hb_009111_050--Hb_001030_120 Hb_009111_050--Hb_001454_210 Hb_000190_140 Hb_000190_140 Hb_009111_050--Hb_000190_140 Hb_009111_050--Hb_015306_020 Hb_003728_030 Hb_003728_030 Hb_002030_030--Hb_003728_030 Hb_004724_200 Hb_004724_200 Hb_002030_030--Hb_004724_200 Hb_000134_090 Hb_000134_090 Hb_002030_030--Hb_000134_090 Hb_004934_090 Hb_004934_090 Hb_002030_030--Hb_004934_090 Hb_002079_010 Hb_002079_010 Hb_002030_030--Hb_002079_010 Hb_003777_330 Hb_003777_330 Hb_001720_050--Hb_003777_330 Hb_000421_260 Hb_000421_260 Hb_001720_050--Hb_000421_260 Hb_000418_100 Hb_000418_100 Hb_001720_050--Hb_000418_100 Hb_002890_340 Hb_002890_340 Hb_001720_050--Hb_002890_340 Hb_000152_820 Hb_000152_820 Hb_001720_050--Hb_000152_820 Hb_004837_040 Hb_004837_040 Hb_000062_240--Hb_004837_040 Hb_001789_090 Hb_001789_090 Hb_000062_240--Hb_001789_090 Hb_000062_240--Hb_002811_360 Hb_000291_110 Hb_000291_110 Hb_000062_240--Hb_000291_110 Hb_000062_240--Hb_000418_100 Hb_000062_240--Hb_015306_020 Hb_004223_090 Hb_004223_090 Hb_003777_270--Hb_004223_090 Hb_000099_240 Hb_000099_240 Hb_003777_270--Hb_000099_240 Hb_003777_270--Hb_009111_050 Hb_000032_570 Hb_000032_570 Hb_003777_270--Hb_000032_570 Hb_133271_020 Hb_133271_020 Hb_003777_270--Hb_133271_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.1594 6.61267 3.64393 4.13409 12.4282 21.9691
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.1553 12.2962 12.6556 8.16549 4.37449

CAGE analysis