Hb_033642_020

Information

Type -
Description -
Location Contig33642: 39168-41783
Sequence    

Annotation

kegg
ID vvi:100254503
description tRNA pseudouridine synthase-like 1
nr
ID KDP28014.1
description hypothetical protein JCGZ_19094 [Jatropha curcas]
swissprot
ID Q6MEE7
description tRNA pseudouridine synthase A 1 OS=Protochlamydia amoebophila (strain UWE25) GN=truA1 PE=3 SV=1
trembl
ID A0A067K865
description tRNA pseudouridine synthase OS=Jatropha curcas GN=JCGZ_19094 PE=3 SV=1
Gene Ontology
ID GO:0003723
description trna pseudouridine synthase-like 1 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35232: 39310-39600 , PASA_asmbl_35233: 40461-40922 , PASA_asmbl_35234: 41006-41781
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033642_020 0.0 - - hypothetical protein JCGZ_19094 [Jatropha curcas]
2 Hb_028900_020 0.0824916779 - - unnamed protein product [Coffea canephora]
3 Hb_000077_050 0.0871213418 - - PREDICTED: elongation factor G-1, mitochondrial isoform X1 [Jatropha curcas]
4 Hb_000176_110 0.0896798278 - - PREDICTED: serine--tRNA ligase [Jatropha curcas]
5 Hb_003106_130 0.0950841268 - - PREDICTED: uncharacterized protein LOC105640436 [Jatropha curcas]
6 Hb_000025_760 0.0952127553 - - -
7 Hb_024714_030 0.0961391612 - - PREDICTED: sm-like protein LSM4 [Jatropha curcas]
8 Hb_010298_010 0.0961999342 - - PREDICTED: uncharacterized protein At2g02148 [Jatropha curcas]
9 Hb_002681_140 0.1002133192 - - PREDICTED: surfeit locus protein 2 [Jatropha curcas]
10 Hb_002955_010 0.1030148854 - - PREDICTED: Werner syndrome ATP-dependent helicase homolog [Jatropha curcas]
11 Hb_003911_040 0.1045547695 - - PREDICTED: putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Jatropha curcas]
12 Hb_000372_040 0.107844749 - - WD-repeat protein, putative [Ricinus communis]
13 Hb_002290_060 0.1084064939 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
14 Hb_000307_200 0.1088957299 - - PREDICTED: uncharacterized protein LOC105638529 [Jatropha curcas]
15 Hb_003352_050 0.109070397 - - PREDICTED: uncharacterized protein LOC105643709 [Jatropha curcas]
16 Hb_000003_090 0.1099065858 - - -
17 Hb_000365_360 0.1100168879 - - PREDICTED: RING finger and transmembrane domain-containing protein 2 isoform X1 [Jatropha curcas]
18 Hb_005784_080 0.1107910265 - - kinase, putative [Ricinus communis]
19 Hb_001369_060 0.1108740789 - - PREDICTED: uncharacterized Rho GTPase-activating protein At5g61530 [Jatropha curcas]
20 Hb_001214_130 0.1109920651 - - PREDICTED: uncharacterized protein LOC105646578 [Jatropha curcas]

Gene co-expression network

sample Hb_033642_020 Hb_033642_020 Hb_028900_020 Hb_028900_020 Hb_033642_020--Hb_028900_020 Hb_000077_050 Hb_000077_050 Hb_033642_020--Hb_000077_050 Hb_000176_110 Hb_000176_110 Hb_033642_020--Hb_000176_110 Hb_003106_130 Hb_003106_130 Hb_033642_020--Hb_003106_130 Hb_000025_760 Hb_000025_760 Hb_033642_020--Hb_000025_760 Hb_024714_030 Hb_024714_030 Hb_033642_020--Hb_024714_030 Hb_028900_020--Hb_000077_050 Hb_003434_060 Hb_003434_060 Hb_028900_020--Hb_003434_060 Hb_000012_090 Hb_000012_090 Hb_028900_020--Hb_000012_090 Hb_000307_200 Hb_000307_200 Hb_028900_020--Hb_000307_200 Hb_028900_020--Hb_000176_110 Hb_014568_030 Hb_014568_030 Hb_000077_050--Hb_014568_030 Hb_001584_110 Hb_001584_110 Hb_000077_050--Hb_001584_110 Hb_000077_050--Hb_003434_060 Hb_000390_060 Hb_000390_060 Hb_000077_050--Hb_000390_060 Hb_000230_330 Hb_000230_330 Hb_000077_050--Hb_000230_330 Hb_000462_150 Hb_000462_150 Hb_000077_050--Hb_000462_150 Hb_003352_050 Hb_003352_050 Hb_000176_110--Hb_003352_050 Hb_003453_020 Hb_003453_020 Hb_000176_110--Hb_003453_020 Hb_000176_110--Hb_000012_090 Hb_000003_090 Hb_000003_090 Hb_000176_110--Hb_000003_090 Hb_006922_080 Hb_006922_080 Hb_000176_110--Hb_006922_080 Hb_000176_110--Hb_000077_050 Hb_003120_060 Hb_003120_060 Hb_003106_130--Hb_003120_060 Hb_119583_010 Hb_119583_010 Hb_003106_130--Hb_119583_010 Hb_001246_100 Hb_001246_100 Hb_003106_130--Hb_001246_100 Hb_002942_020 Hb_002942_020 Hb_003106_130--Hb_002942_020 Hb_000019_230 Hb_000019_230 Hb_003106_130--Hb_000019_230 Hb_002235_150 Hb_002235_150 Hb_003106_130--Hb_002235_150 Hb_000025_760--Hb_003106_130 Hb_002955_010 Hb_002955_010 Hb_000025_760--Hb_002955_010 Hb_001758_020 Hb_001758_020 Hb_000025_760--Hb_001758_020 Hb_010298_010 Hb_010298_010 Hb_000025_760--Hb_010298_010 Hb_003911_040 Hb_003911_040 Hb_000025_760--Hb_003911_040 Hb_002014_080 Hb_002014_080 Hb_024714_030--Hb_002014_080 Hb_000671_100 Hb_000671_100 Hb_024714_030--Hb_000671_100 Hb_003638_140 Hb_003638_140 Hb_024714_030--Hb_003638_140 Hb_024714_030--Hb_014568_030 Hb_002215_050 Hb_002215_050 Hb_024714_030--Hb_002215_050 Hb_035524_030 Hb_035524_030 Hb_024714_030--Hb_035524_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.71022 2.33635 2.06749 2.1123 14.2468 21.1618
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.31184 6.94948 5.1342 2.31388 2.15028

CAGE analysis