Hb_033642_060

Information

Type -
Description -
Location Contig33642: 73681-79890
Sequence    

Annotation

kegg
ID pop:POPTR_0010s00550g
description POPTRDRAFT_725566; hypothetical protein
nr
ID XP_012084221.1
description PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
swissprot
ID Q9LI74
description Protein CHUP1, chloroplastic OS=Arabidopsis thaliana GN=CHUP1 PE=1 SV=1
trembl
ID B9HXB3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s00550g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35243: 76272-76400 , PASA_asmbl_35244: 76545-77380 , PASA_asmbl_35245: 77407-79872 , PASA_asmbl_35246: 77409-79702
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033642_060 0.0 - - PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
2 Hb_183086_030 0.0311578932 - - GTPase-activating protein GYP7 [Gossypium arboreum]
3 Hb_001801_020 0.0666847945 - - PREDICTED: xylosyltransferase 1 [Jatropha curcas]
4 Hb_022250_010 0.0810685216 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10L [Jatropha curcas]
5 Hb_000359_190 0.0888384901 - - PREDICTED: protein VACUOLELESS1 [Nicotiana sylvestris]
6 Hb_002400_060 0.0896258746 - - PREDICTED: putative clathrin assembly protein At2g25430 [Jatropha curcas]
7 Hb_001246_130 0.0947450864 - - PREDICTED: NAD-dependent malic enzyme 62 kDa isoform, mitochondrial [Jatropha curcas]
8 Hb_000510_150 0.0963449595 - - PREDICTED: magnesium transporter MRS2-I-like isoform X1 [Jatropha curcas]
9 Hb_000562_050 0.097955242 - - PREDICTED: uncharacterized protein LOC105635369 [Jatropha curcas]
10 Hb_001226_110 0.0983095685 - - PREDICTED: uncharacterized protein LOC105638106 [Jatropha curcas]
11 Hb_000085_260 0.0990539451 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
12 Hb_021977_010 0.0990799076 - - PREDICTED: leukotriene A-4 hydrolase homolog [Jatropha curcas]
13 Hb_002301_030 0.0996349578 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
14 Hb_008014_040 0.10022165 - - PREDICTED: uncharacterized protein LOC105649721 [Jatropha curcas]
15 Hb_001541_150 0.1010839998 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000265_140 0.1028188232 - - PREDICTED: transmembrane 9 superfamily member 12 [Jatropha curcas]
17 Hb_015884_020 0.1049455367 - - PREDICTED: protein PIR [Jatropha curcas]
18 Hb_000922_060 0.1050499613 - - kinesin light chain, putative [Ricinus communis]
19 Hb_009476_120 0.1067991549 - - Clathrin heavy chain 1 [Glycine soja]
20 Hb_002311_130 0.1071754857 - - PREDICTED: importin subunit alpha-2 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_033642_060 Hb_033642_060 Hb_183086_030 Hb_183086_030 Hb_033642_060--Hb_183086_030 Hb_001801_020 Hb_001801_020 Hb_033642_060--Hb_001801_020 Hb_022250_010 Hb_022250_010 Hb_033642_060--Hb_022250_010 Hb_000359_190 Hb_000359_190 Hb_033642_060--Hb_000359_190 Hb_002400_060 Hb_002400_060 Hb_033642_060--Hb_002400_060 Hb_001246_130 Hb_001246_130 Hb_033642_060--Hb_001246_130 Hb_183086_030--Hb_022250_010 Hb_183086_030--Hb_001801_020 Hb_183086_030--Hb_000359_190 Hb_000922_060 Hb_000922_060 Hb_183086_030--Hb_000922_060 Hb_183086_030--Hb_001246_130 Hb_001801_020--Hb_002400_060 Hb_001801_020--Hb_022250_010 Hb_126976_010 Hb_126976_010 Hb_001801_020--Hb_126976_010 Hb_002817_060 Hb_002817_060 Hb_001801_020--Hb_002817_060 Hb_001876_040 Hb_001876_040 Hb_022250_010--Hb_001876_040 Hb_001157_230 Hb_001157_230 Hb_022250_010--Hb_001157_230 Hb_001541_150 Hb_001541_150 Hb_022250_010--Hb_001541_150 Hb_001029_040 Hb_001029_040 Hb_022250_010--Hb_001029_040 Hb_000270_190 Hb_000270_190 Hb_022250_010--Hb_000270_190 Hb_000358_100 Hb_000358_100 Hb_000359_190--Hb_000358_100 Hb_044486_020 Hb_044486_020 Hb_000359_190--Hb_044486_020 Hb_000020_160 Hb_000020_160 Hb_000359_190--Hb_000020_160 Hb_021977_010 Hb_021977_010 Hb_000359_190--Hb_021977_010 Hb_000103_290 Hb_000103_290 Hb_000359_190--Hb_000103_290 Hb_002311_130 Hb_002311_130 Hb_002400_060--Hb_002311_130 Hb_001210_040 Hb_001210_040 Hb_002400_060--Hb_001210_040 Hb_009674_050 Hb_009674_050 Hb_002400_060--Hb_009674_050 Hb_000265_140 Hb_000265_140 Hb_002400_060--Hb_000265_140 Hb_002007_260 Hb_002007_260 Hb_001246_130--Hb_002007_260 Hb_030982_010 Hb_030982_010 Hb_001246_130--Hb_030982_010 Hb_006120_050 Hb_006120_050 Hb_001246_130--Hb_006120_050 Hb_000054_040 Hb_000054_040 Hb_001246_130--Hb_000054_040 Hb_002552_040 Hb_002552_040 Hb_001246_130--Hb_002552_040 Hb_002045_170 Hb_002045_170 Hb_001246_130--Hb_002045_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.23599 12.0503 11.2579 22.8291 6.49169 8.33939
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.78176 3.38145 5.25777 11.5522 20.2111

CAGE analysis