Hb_033642_080

Information

Type -
Description -
Location Contig33642: 102342-105101
Sequence    

Annotation

kegg
ID rcu:RCOM_1690700
description vacuolar ATP synthase subunit E, putative
nr
ID AHA83526.1
description V-type proton ATPase subunit E [Hevea brasiliensis]
swissprot
ID Q9SWE7
description V-type proton ATPase subunit E OS=Citrus limon GN=VATE PE=2 SV=1
trembl
ID W5RRH1
description V-type proton ATPase subunit E OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0033178
description v-type proton atpase subunit e

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35248: 102442-106759
cDNA
(Sanger)
(ID:Location)		 012_H05.ab1: 102481-106495 , 040_P12.ab1: 104569-106680 , 053_D06.ab1: 104614-106680

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033642_080 0.0 - - V-type proton ATPase subunit E [Hevea brasiliensis]
2 Hb_091433_020 0.0689243383 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
3 Hb_004567_120 0.0725640189 - - PREDICTED: 60S ribosomal protein L13a-4-like [Jatropha curcas]
4 Hb_000496_120 0.074887823 - - PREDICTED: iron-sulfur protein NUBPL [Jatropha curcas]
5 Hb_000417_360 0.0750849599 - - PREDICTED: hexaprenyldihydroxybenzoate methyltransferase, mitochondrial [Jatropha curcas]
6 Hb_006478_150 0.0774860681 - - mitochondrial ribosomal protein L24, putative [Ricinus communis]
7 Hb_180074_010 0.0779278031 - - Single-stranded DNA-binding protein, mitochondrial precursor, putative [Ricinus communis]
8 Hb_004216_050 0.0802568824 - - PREDICTED: uncharacterized protein LOC105628422 [Jatropha curcas]
9 Hb_002676_090 0.0829816474 - - PREDICTED: protein TIC 22-like, chloroplastic [Jatropha curcas]
10 Hb_004767_080 0.0844026866 - - PREDICTED: mitochondrial ATPase complex subunit ATP10 isoform X1 [Jatropha curcas]
11 Hb_005568_120 0.0852874913 - - Prephenate dehydratase [Hevea brasiliensis]
12 Hb_000922_040 0.0876306959 - - PREDICTED: CASP-like protein 4A3 [Jatropha curcas]
13 Hb_027654_050 0.0940325732 - - PREDICTED: uncharacterized protein LOC105646592 [Jatropha curcas]
14 Hb_005305_150 0.0947122303 - - PREDICTED: 40S ribosomal protein S2-4-like [Jatropha curcas]
15 Hb_001545_170 0.0950507159 - - PREDICTED: cleavage stimulating factor 64 isoform X1 [Jatropha curcas]
16 Hb_011671_100 0.0954346845 - - 60S ribosomal protein L15 [Populus trichocarpa]
17 Hb_000525_020 0.0964160077 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_000571_020 0.0982085371 - - PREDICTED: BAG family molecular chaperone regulator 4 isoform X1 [Jatropha curcas]
19 Hb_004543_040 0.0983069365 - - ABC transporter family protein [Hevea brasiliensis]
20 Hb_001005_080 0.098424842 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_033642_080 Hb_033642_080 Hb_091433_020 Hb_091433_020 Hb_033642_080--Hb_091433_020 Hb_004567_120 Hb_004567_120 Hb_033642_080--Hb_004567_120 Hb_000496_120 Hb_000496_120 Hb_033642_080--Hb_000496_120 Hb_000417_360 Hb_000417_360 Hb_033642_080--Hb_000417_360 Hb_006478_150 Hb_006478_150 Hb_033642_080--Hb_006478_150 Hb_180074_010 Hb_180074_010 Hb_033642_080--Hb_180074_010 Hb_091433_020--Hb_000417_360 Hb_004767_080 Hb_004767_080 Hb_091433_020--Hb_004767_080 Hb_000731_190 Hb_000731_190 Hb_091433_020--Hb_000731_190 Hb_091433_020--Hb_000496_120 Hb_011671_100 Hb_011671_100 Hb_091433_020--Hb_011671_100 Hb_004216_050 Hb_004216_050 Hb_004567_120--Hb_004216_050 Hb_004567_120--Hb_006478_150 Hb_002676_090 Hb_002676_090 Hb_004567_120--Hb_002676_090 Hb_005568_120 Hb_005568_120 Hb_004567_120--Hb_005568_120 Hb_011644_030 Hb_011644_030 Hb_004567_120--Hb_011644_030 Hb_000136_170 Hb_000136_170 Hb_004567_120--Hb_000136_170 Hb_000215_060 Hb_000215_060 Hb_000496_120--Hb_000215_060 Hb_000496_120--Hb_004216_050 Hb_001814_050 Hb_001814_050 Hb_000496_120--Hb_001814_050 Hb_005305_150 Hb_005305_150 Hb_000496_120--Hb_005305_150 Hb_010175_040 Hb_010175_040 Hb_000417_360--Hb_010175_040 Hb_000920_110 Hb_000920_110 Hb_000417_360--Hb_000920_110 Hb_000417_360--Hb_000731_190 Hb_001085_120 Hb_001085_120 Hb_000417_360--Hb_001085_120 Hb_000261_140 Hb_000261_140 Hb_000417_360--Hb_000261_140 Hb_006478_150--Hb_004216_050 Hb_006478_150--Hb_091433_020 Hb_006478_150--Hb_000417_360 Hb_000441_110 Hb_000441_110 Hb_006478_150--Hb_000441_110 Hb_180074_010--Hb_091433_020 Hb_011671_440 Hb_011671_440 Hb_180074_010--Hb_011671_440 Hb_005391_030 Hb_005391_030 Hb_180074_010--Hb_005391_030 Hb_000896_040 Hb_000896_040 Hb_180074_010--Hb_000896_040 Hb_180074_010--Hb_006478_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.4362 35.3241 32.8755 49.7899 25.8014 39.237
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
103.331 163.161 81.9713 78.8157 38.2792

CAGE analysis