Hb_033642_090

Information

Type -
Description -
Location Contig33642: 107638-111530
Sequence    

Annotation

kegg
ID rcu:RCOM_0573010
description hypothetical protein
nr
ID XP_002529651.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9V106
description tRNA (cytosine(49)-C(5))-methyltransferase OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=PYRAB06230 PE=1 SV=1
trembl
ID B9SUI2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0573010 PE=4 SV=1
Gene Ontology
ID GO:0008168
description probable 28s rrna (cytosine-c )-methyltransferase isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35251: 108169-109488 , PASA_asmbl_35252: 110033-111154 , PASA_asmbl_35253: 110033-111154
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033642_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001357_250 0.0447862548 - - PREDICTED: UPF0505 protein C16orf62 homolog [Jatropha curcas]
3 Hb_000907_110 0.0623978891 - - dihydroxyacetone kinase family protein [Populus trichocarpa]
4 Hb_002784_020 0.0655439002 - - PREDICTED: probable protein arginine N-methyltransferase 3 [Jatropha curcas]
5 Hb_006831_140 0.06608986 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
6 Hb_123915_040 0.0662453379 - - PREDICTED: uncharacterized protein LOC105633952 [Jatropha curcas]
7 Hb_000696_230 0.0670008606 - - hypothetical protein POPTR_0005s11280g [Populus trichocarpa]
8 Hb_000417_130 0.067668522 - - PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]
9 Hb_000006_040 0.070067858 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
10 Hb_004254_090 0.0717672518 - - PREDICTED: cleavage stimulating factor 64 [Jatropha curcas]
11 Hb_000165_040 0.0723067845 - - hypothetical protein JCGZ_01206 [Jatropha curcas]
12 Hb_000181_400 0.072337551 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 25 isoform X2 [Jatropha curcas]
13 Hb_004410_030 0.0731722049 - - PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_001235_150 0.0743766079 - - PREDICTED: chaperone protein dnaJ 13 isoform X1 [Jatropha curcas]
15 Hb_001021_150 0.0763048151 - - PREDICTED: metal tolerance protein C1 [Jatropha curcas]
16 Hb_002197_050 0.0765743797 - - hypothetical protein CICLE_v10002157mg [Citrus clementina]
17 Hb_003294_070 0.0768025637 - - hypothetical protein RCOM_1714550 [Ricinus communis]
18 Hb_000589_120 0.0778920076 - - PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30 [Gossypium raimondii]
19 Hb_003847_130 0.0782541055 - - cytochrome C oxidase assembly protein cox11, putative [Ricinus communis]
20 Hb_007576_080 0.0801949514 - - PREDICTED: uncharacterized protein LOC105643972 [Jatropha curcas]

Gene co-expression network

sample Hb_033642_090 Hb_033642_090 Hb_001357_250 Hb_001357_250 Hb_033642_090--Hb_001357_250 Hb_000907_110 Hb_000907_110 Hb_033642_090--Hb_000907_110 Hb_002784_020 Hb_002784_020 Hb_033642_090--Hb_002784_020 Hb_006831_140 Hb_006831_140 Hb_033642_090--Hb_006831_140 Hb_123915_040 Hb_123915_040 Hb_033642_090--Hb_123915_040 Hb_000696_230 Hb_000696_230 Hb_033642_090--Hb_000696_230 Hb_004410_030 Hb_004410_030 Hb_001357_250--Hb_004410_030 Hb_000417_130 Hb_000417_130 Hb_001357_250--Hb_000417_130 Hb_001357_250--Hb_123915_040 Hb_001357_250--Hb_000907_110 Hb_063716_100 Hb_063716_100 Hb_001357_250--Hb_063716_100 Hb_000181_400 Hb_000181_400 Hb_000907_110--Hb_000181_400 Hb_028285_010 Hb_028285_010 Hb_000907_110--Hb_028285_010 Hb_004324_130 Hb_004324_130 Hb_000907_110--Hb_004324_130 Hb_000130_410 Hb_000130_410 Hb_000907_110--Hb_000130_410 Hb_017862_020 Hb_017862_020 Hb_002784_020--Hb_017862_020 Hb_164544_010 Hb_164544_010 Hb_002784_020--Hb_164544_010 Hb_002375_010 Hb_002375_010 Hb_002784_020--Hb_002375_010 Hb_002784_020--Hb_000696_230 Hb_000617_180 Hb_000617_180 Hb_002784_020--Hb_000617_180 Hb_028872_090 Hb_028872_090 Hb_002784_020--Hb_028872_090 Hb_000708_030 Hb_000708_030 Hb_006831_140--Hb_000708_030 Hb_000078_120 Hb_000078_120 Hb_006831_140--Hb_000078_120 Hb_093458_040 Hb_093458_040 Hb_006831_140--Hb_093458_040 Hb_001876_050 Hb_001876_050 Hb_006831_140--Hb_001876_050 Hb_001021_150 Hb_001021_150 Hb_006831_140--Hb_001021_150 Hb_002078_350 Hb_002078_350 Hb_006831_140--Hb_002078_350 Hb_123915_040--Hb_000417_130 Hb_000317_470 Hb_000317_470 Hb_123915_040--Hb_000317_470 Hb_004254_090 Hb_004254_090 Hb_123915_040--Hb_004254_090 Hb_000905_110 Hb_000905_110 Hb_123915_040--Hb_000905_110 Hb_123915_040--Hb_001021_150 Hb_000975_040 Hb_000975_040 Hb_000696_230--Hb_000975_040 Hb_000484_030 Hb_000484_030 Hb_000696_230--Hb_000484_030 Hb_000441_120 Hb_000441_120 Hb_000696_230--Hb_000441_120 Hb_001408_040 Hb_001408_040 Hb_000696_230--Hb_001408_040 Hb_005867_070 Hb_005867_070 Hb_000696_230--Hb_005867_070 Hb_003464_090 Hb_003464_090 Hb_000696_230--Hb_003464_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.80477 4.06949 4.1073 3.53359 5.17891 4.95311
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.94934 5.7592 3.33501 6.82723 3.81187

CAGE analysis