Hb_033642_100

Information

Type -
Description -
Location Contig33642: 111976-117892
Sequence    

Annotation

kegg
ID pmum:103340300
description receptor homology region, transmembrane domain- and RING domain-containing protein 1
nr
ID XP_008241912.1
description PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 1 [Prunus mume]
swissprot
ID Q9M622
description Receptor homology region, transmembrane domain- and RING domain-containing protein 1 OS=Arabidopsis thaliana GN=RMR1 PE=2 SV=1
trembl
ID A0A067LHG6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06571 PE=4 SV=1
Gene Ontology
ID GO:0000306
description receptor homology transmembrane domain- and ring domain-containing protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35254: 114055-115713 , PASA_asmbl_35255: 115237-115812 , PASA_asmbl_35256: 112619-115220 , PASA_asmbl_35257: 116595-118055 , PASA_asmbl_35258: 116652-117966
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033642_100 0.0 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 1 [Prunus mume]
2 Hb_001488_340 0.1476490285 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]
3 Hb_002411_180 0.1619999359 - - PREDICTED: THO complex subunit 1 isoform X1 [Jatropha curcas]
4 Hb_001863_260 0.1626898133 - - ubiquitin-protein ligase, putative [Ricinus communis]
5 Hb_000198_070 0.1650966968 - - PREDICTED: cyclin-dependent kinase inhibitor 7-like [Jatropha curcas]
6 Hb_007777_020 0.1711895872 - - hypothetical protein JCGZ_14410 [Jatropha curcas]
7 Hb_001882_040 0.1723442402 - - PREDICTED: probable hydroxyacylglutathione hydrolase 2, chloroplast [Jatropha curcas]
8 Hb_002739_080 0.1741529011 - - cystathionine beta-lyase, putative [Ricinus communis]
9 Hb_001085_250 0.1769112431 transcription factor TF Family: G2-like PREDICTED: myb family transcription factor APL isoform X2 [Jatropha curcas]
10 Hb_005085_020 0.182983931 - - hypothetical protein B456_001G193200 [Gossypium raimondii]
11 Hb_000365_160 0.183338149 - - PREDICTED: serine/threonine-protein kinase At5g01020 [Jatropha curcas]
12 Hb_000270_160 0.184080435 - - PREDICTED: uncharacterized protein LOC102625351 [Citrus sinensis]
13 Hb_000302_160 0.1848260599 - - PREDICTED: uncharacterized protein LOC105648403 [Jatropha curcas]
14 Hb_134364_010 0.1851120911 - - PREDICTED: transcriptional adapter ADA2b isoform X1 [Jatropha curcas]
15 Hb_015354_010 0.1862677481 - - PREDICTED: B2 protein [Jatropha curcas]
16 Hb_000016_030 0.1867483101 - - PREDICTED: hippocampus abundant transcript-like protein 1 isoform X1 [Jatropha curcas]
17 Hb_000364_080 0.1880250852 - - PREDICTED: OTU domain-containing protein 3 isoform X1 [Jatropha curcas]
18 Hb_001141_410 0.1888181953 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Jatropha curcas]
19 Hb_089889_020 0.1928009567 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein At2g36080-like [Jatropha curcas]
20 Hb_000996_180 0.1941540284 - - PREDICTED: tetraspanin-10 [Jatropha curcas]

Gene co-expression network

sample Hb_033642_100 Hb_033642_100 Hb_001488_340 Hb_001488_340 Hb_033642_100--Hb_001488_340 Hb_002411_180 Hb_002411_180 Hb_033642_100--Hb_002411_180 Hb_001863_260 Hb_001863_260 Hb_033642_100--Hb_001863_260 Hb_000198_070 Hb_000198_070 Hb_033642_100--Hb_000198_070 Hb_007777_020 Hb_007777_020 Hb_033642_100--Hb_007777_020 Hb_001882_040 Hb_001882_040 Hb_033642_100--Hb_001882_040 Hb_005085_020 Hb_005085_020 Hb_001488_340--Hb_005085_020 Hb_074449_010 Hb_074449_010 Hb_001488_340--Hb_074449_010 Hb_001488_340--Hb_001882_040 Hb_000270_870 Hb_000270_870 Hb_001488_340--Hb_000270_870 Hb_001141_410 Hb_001141_410 Hb_001488_340--Hb_001141_410 Hb_001488_340--Hb_000198_070 Hb_009838_130 Hb_009838_130 Hb_002411_180--Hb_009838_130 Hb_001396_290 Hb_001396_290 Hb_002411_180--Hb_001396_290 Hb_008518_050 Hb_008518_050 Hb_002411_180--Hb_008518_050 Hb_009913_050 Hb_009913_050 Hb_002411_180--Hb_009913_050 Hb_005214_060 Hb_005214_060 Hb_002411_180--Hb_005214_060 Hb_002048_090 Hb_002048_090 Hb_002411_180--Hb_002048_090 Hb_134364_010 Hb_134364_010 Hb_001863_260--Hb_134364_010 Hb_006824_060 Hb_006824_060 Hb_001863_260--Hb_006824_060 Hb_030827_030 Hb_030827_030 Hb_001863_260--Hb_030827_030 Hb_007262_020 Hb_007262_020 Hb_001863_260--Hb_007262_020 Hb_001085_250 Hb_001085_250 Hb_001863_260--Hb_001085_250 Hb_008253_010 Hb_008253_010 Hb_001863_260--Hb_008253_010 Hb_000606_080 Hb_000606_080 Hb_000198_070--Hb_000606_080 Hb_012132_040 Hb_012132_040 Hb_000198_070--Hb_012132_040 Hb_013691_020 Hb_013691_020 Hb_000198_070--Hb_013691_020 Hb_002067_020 Hb_002067_020 Hb_000198_070--Hb_002067_020 Hb_000364_080 Hb_000364_080 Hb_000198_070--Hb_000364_080 Hb_000523_090 Hb_000523_090 Hb_000198_070--Hb_000523_090 Hb_031866_060 Hb_031866_060 Hb_007777_020--Hb_031866_060 Hb_000866_420 Hb_000866_420 Hb_007777_020--Hb_000866_420 Hb_041392_010 Hb_041392_010 Hb_007777_020--Hb_041392_010 Hb_007777_020--Hb_012132_040 Hb_000159_110 Hb_000159_110 Hb_007777_020--Hb_000159_110 Hb_011609_170 Hb_011609_170 Hb_001882_040--Hb_011609_170 Hb_001910_020 Hb_001910_020 Hb_001882_040--Hb_001910_020 Hb_001163_120 Hb_001163_120 Hb_001882_040--Hb_001163_120 Hb_035318_010 Hb_035318_010 Hb_001882_040--Hb_035318_010 Hb_000031_280 Hb_000031_280 Hb_001882_040--Hb_000031_280 Hb_000336_270 Hb_000336_270 Hb_001882_040--Hb_000336_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.2079 13.2189 19.1865 16.2247 19.724 53.5828
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.2392 4.11796 1.75687 2.92351 11.5899

CAGE analysis