Hb_033642_120

Information

Type -
Description -
Location Contig33642: 126943-132536
Sequence    

Annotation

kegg
ID vvi:100246891
description nucleolar GTP-binding protein 2
nr
ID XP_002284849.1
description PREDICTED: nucleolar GTP-binding protein 2 [Vitis vinifera]
swissprot
ID Q10LF7
description Nuclear/nucleolar GTPase 2 OS=Oryza sativa subsp. japonica GN=NUG2 PE=1 SV=1
trembl
ID A5BN51
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000763 PE=4 SV=1
Gene Ontology
ID GO:0005730
description nucleolar gtp-binding protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35264: 126891-132497
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033642_120 0.0 - - PREDICTED: nucleolar GTP-binding protein 2 [Vitis vinifera]
2 Hb_000868_120 0.0571582476 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 2 [Jatropha curcas]
3 Hb_003470_040 0.0572195885 - - PREDICTED: 2-oxoisovalerate dehydrogenase subunit beta 1, mitochondrial [Jatropha curcas]
4 Hb_000207_200 0.0641819968 - - PREDICTED: histidinol-phosphate aminotransferase, chloroplastic-like [Jatropha curcas]
5 Hb_001439_220 0.0662970673 - - xenotropic and polytropic murine leukemia virus receptor ids-4, putative [Ricinus communis]
6 Hb_000661_120 0.069378892 - - cap binding protein, putative [Ricinus communis]
7 Hb_010287_020 0.0705621267 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
8 Hb_029695_080 0.0726941988 - - PREDICTED: NAD-dependent protein deacetylase SRT1 [Prunus mume]
9 Hb_000975_210 0.0734191683 - - PREDICTED: THO complex subunit 4A [Jatropha curcas]
10 Hb_002110_160 0.0735750122 - - PREDICTED: phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic [Jatropha curcas]
11 Hb_005333_140 0.0739956636 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 16 isoform X1 [Jatropha curcas]
12 Hb_000173_190 0.074235349 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000445_060 0.0743080689 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
14 Hb_000282_090 0.0757684429 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
15 Hb_009178_010 0.0761460653 - - PREDICTED: uncharacterized protein LOC105637474 [Jatropha curcas]
16 Hb_000034_110 0.0772207788 - - sentrin/sumo-specific protease, putative [Ricinus communis]
17 Hb_001635_110 0.0774315297 - - PREDICTED: NADP-specific glutamate dehydrogenase [Jatropha curcas]
18 Hb_008054_040 0.0775592454 - - PREDICTED: cullin-4 [Jatropha curcas]
19 Hb_000996_020 0.0794177275 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
20 Hb_003913_020 0.0798371537 - - PREDICTED: C2 and GRAM domain-containing protein At5g50170 [Jatropha curcas]

Gene co-expression network

sample Hb_033642_120 Hb_033642_120 Hb_000868_120 Hb_000868_120 Hb_033642_120--Hb_000868_120 Hb_003470_040 Hb_003470_040 Hb_033642_120--Hb_003470_040 Hb_000207_200 Hb_000207_200 Hb_033642_120--Hb_000207_200 Hb_001439_220 Hb_001439_220 Hb_033642_120--Hb_001439_220 Hb_000661_120 Hb_000661_120 Hb_033642_120--Hb_000661_120 Hb_010287_020 Hb_010287_020 Hb_033642_120--Hb_010287_020 Hb_000445_060 Hb_000445_060 Hb_000868_120--Hb_000445_060 Hb_000868_120--Hb_010287_020 Hb_000676_330 Hb_000676_330 Hb_000868_120--Hb_000676_330 Hb_000868_120--Hb_001439_220 Hb_000868_120--Hb_000661_120 Hb_029695_080 Hb_029695_080 Hb_003470_040--Hb_029695_080 Hb_003470_040--Hb_000207_200 Hb_003687_120 Hb_003687_120 Hb_003470_040--Hb_003687_120 Hb_000089_210 Hb_000089_210 Hb_003470_040--Hb_000089_210 Hb_002110_160 Hb_002110_160 Hb_003470_040--Hb_002110_160 Hb_002909_040 Hb_002909_040 Hb_000207_200--Hb_002909_040 Hb_000207_200--Hb_000089_210 Hb_000207_200--Hb_029695_080 Hb_000207_200--Hb_002110_160 Hb_000085_210 Hb_000085_210 Hb_001439_220--Hb_000085_210 Hb_001439_220--Hb_010287_020 Hb_001439_220--Hb_000445_060 Hb_002435_100 Hb_002435_100 Hb_001439_220--Hb_002435_100 Hb_000996_020 Hb_000996_020 Hb_000661_120--Hb_000996_020 Hb_000661_120--Hb_000445_060 Hb_000373_170 Hb_000373_170 Hb_000661_120--Hb_000373_170 Hb_000340_030 Hb_000340_030 Hb_000661_120--Hb_000340_030 Hb_000529_060 Hb_000529_060 Hb_000661_120--Hb_000529_060 Hb_006452_180 Hb_006452_180 Hb_010287_020--Hb_006452_180 Hb_010287_020--Hb_002110_160 Hb_001699_010 Hb_001699_010 Hb_010287_020--Hb_001699_010 Hb_010287_020--Hb_000445_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.00072 16.0131 20.6401 10.9727 9.39294 5.92414
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.28013 7.9202 4.82812 11.0703 12.742

CAGE analysis