Hb_033661_010

Information

Type -
Description -
Location Contig33661: 2656-6722
Sequence    

Annotation

kegg
ID tcc:TCM_044868
description hypothetical protein
nr
ID XP_012572980.1
description PREDICTED: uncharacterized protein LOC105852393, partial [Cicer arietinum]
swissprot
ID Q99315
description Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3
trembl
ID A5AT36
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_019676 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033661_010 0.0 - - PREDICTED: uncharacterized protein LOC105852393, partial [Cicer arietinum]
2 Hb_001277_230 0.2079768775 - - -
3 Hb_002304_020 0.2146131219 - - -
4 Hb_080085_010 0.2285872134 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
5 Hb_103362_010 0.2308369208 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
6 Hb_158560_010 0.247938059 - - PREDICTED: LOW QUALITY PROTEIN: probable acyl-activating enzyme 1, peroxisomal [Jatropha curcas]
7 Hb_004785_080 0.2596764503 - - hypothetical protein POPTR_0005s21250g [Populus trichocarpa]
8 Hb_001080_090 0.2627305272 - - PREDICTED: BTB/POZ domain-containing protein At2g30600 isoform X1 [Jatropha curcas]
9 Hb_000661_080 0.2709385581 - - monoxygenase, putative [Ricinus communis]
10 Hb_006054_050 0.2724378618 - - PREDICTED: uncharacterized protein LOC105649250, partial [Jatropha curcas]
11 Hb_003813_160 0.2754734314 - - -
12 Hb_001233_040 0.2797432374 - - PREDICTED: uncharacterized protein LOC105775263 [Gossypium raimondii]
13 Hb_015026_080 0.2813381203 - - -
14 Hb_002713_010 0.2822125547 - - multidrug resistance protein 1, 2, putative [Ricinus communis]
15 Hb_000731_170 0.28258743 - - PREDICTED: phospholipase A I [Jatropha curcas]
16 Hb_002602_020 0.2857885009 - - -
17 Hb_000648_040 0.2863636543 - - unknown [Populus trichocarpa]
18 Hb_000614_150 0.2884672511 - - PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like [Jatropha curcas]
19 Hb_004899_260 0.2893368825 - - PREDICTED: uncharacterized protein LOC105638006 [Jatropha curcas]
20 Hb_000130_260 0.2897245912 rubber biosynthesis Gene Name: Dimethyallyltransferase PREDICTED: tRNA dimethylallyltransferase 9 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_033661_010 Hb_033661_010 Hb_001277_230 Hb_001277_230 Hb_033661_010--Hb_001277_230 Hb_002304_020 Hb_002304_020 Hb_033661_010--Hb_002304_020 Hb_080085_010 Hb_080085_010 Hb_033661_010--Hb_080085_010 Hb_103362_010 Hb_103362_010 Hb_033661_010--Hb_103362_010 Hb_158560_010 Hb_158560_010 Hb_033661_010--Hb_158560_010 Hb_004785_080 Hb_004785_080 Hb_033661_010--Hb_004785_080 Hb_002248_030 Hb_002248_030 Hb_001277_230--Hb_002248_030 Hb_000032_060 Hb_000032_060 Hb_001277_230--Hb_000032_060 Hb_005928_040 Hb_005928_040 Hb_001277_230--Hb_005928_040 Hb_027472_140 Hb_027472_140 Hb_001277_230--Hb_027472_140 Hb_177132_010 Hb_177132_010 Hb_001277_230--Hb_177132_010 Hb_001277_230--Hb_158560_010 Hb_011316_090 Hb_011316_090 Hb_002304_020--Hb_011316_090 Hb_006373_040 Hb_006373_040 Hb_002304_020--Hb_006373_040 Hb_002188_120 Hb_002188_120 Hb_002304_020--Hb_002188_120 Hb_001369_750 Hb_001369_750 Hb_002304_020--Hb_001369_750 Hb_001080_090 Hb_001080_090 Hb_002304_020--Hb_001080_090 Hb_000281_090 Hb_000281_090 Hb_002304_020--Hb_000281_090 Hb_040290_010 Hb_040290_010 Hb_080085_010--Hb_040290_010 Hb_080085_010--Hb_103362_010 Hb_058722_010 Hb_058722_010 Hb_080085_010--Hb_058722_010 Hb_001377_250 Hb_001377_250 Hb_080085_010--Hb_001377_250 Hb_080085_010--Hb_001277_230 Hb_000656_060 Hb_000656_060 Hb_103362_010--Hb_000656_060 Hb_001726_050 Hb_001726_050 Hb_103362_010--Hb_001726_050 Hb_000110_270 Hb_000110_270 Hb_103362_010--Hb_000110_270 Hb_000329_750 Hb_000329_750 Hb_103362_010--Hb_000329_750 Hb_011021_050 Hb_011021_050 Hb_103362_010--Hb_011021_050 Hb_000672_040 Hb_000672_040 Hb_103362_010--Hb_000672_040 Hb_000648_040 Hb_000648_040 Hb_158560_010--Hb_000648_040 Hb_003417_040 Hb_003417_040 Hb_158560_010--Hb_003417_040 Hb_003849_280 Hb_003849_280 Hb_158560_010--Hb_003849_280 Hb_000614_150 Hb_000614_150 Hb_158560_010--Hb_000614_150 Hb_158560_010--Hb_001080_090 Hb_158560_010--Hb_000110_270 Hb_000204_070 Hb_000204_070 Hb_004785_080--Hb_000204_070 Hb_000197_220 Hb_000197_220 Hb_004785_080--Hb_000197_220 Hb_004785_080--Hb_158560_010 Hb_052764_110 Hb_052764_110 Hb_004785_080--Hb_052764_110 Hb_001999_210 Hb_001999_210 Hb_004785_080--Hb_001999_210 Hb_000789_200 Hb_000789_200 Hb_004785_080--Hb_000789_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.031795 0.0648708 0 0.0194102 0.0171105 0.0406962
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.041521 0.0653417 0 0.0324724 0.103789

CAGE analysis