Hb_033720_010

Information

Type -
Description -
Location Contig33720: 5604-10496
Sequence    

Annotation

kegg
ID egr:104426974
description uncharacterized LOC104426974
nr
ID XP_012090734.1
description PREDICTED: uncharacterized protein LOC105648843 [Jatropha curcas]
swissprot
ID Q67ZM4
description Actin-depolymerizing factor 7 OS=Arabidopsis thaliana GN=ADF7 PE=2 SV=1
trembl
ID I6XNH4
description Putative actin-depolymerizing factor 12 OS=Linum usitatissimum PE=4 SV=1
Gene Ontology
ID GO:0015629
description actin-depolymerizing factor 12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35302: 5607-8641 , PASA_asmbl_35304: 9847-10549
cDNA
(Sanger)
(ID:Location)		 052_K24.ab1: 5607-7519

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033720_010 0.0 - - PREDICTED: uncharacterized protein LOC105648843 [Jatropha curcas]
2 Hb_023386_020 0.0528064256 - - PREDICTED: chaperone protein dnaJ 13 isoform X2 [Jatropha curcas]
3 Hb_000853_230 0.0569768137 - - syntaxin, putative [Ricinus communis]
4 Hb_000879_200 0.0591977795 - - PREDICTED: A-kinase anchor protein 17A [Jatropha curcas]
5 Hb_002686_250 0.0593992162 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X1 [Jatropha curcas]
6 Hb_000794_050 0.0605176166 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 12 [Jatropha curcas]
7 Hb_006620_020 0.0611032141 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
8 Hb_000038_170 0.062697694 - - PREDICTED: SCY1-like protein 2 [Jatropha curcas]
9 Hb_003029_030 0.0628579467 - - PREDICTED: uncharacterized protein LOC105642632 isoform X2 [Jatropha curcas]
10 Hb_000926_190 0.0642482096 - - PREDICTED: 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
11 Hb_001926_030 0.0647018099 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
12 Hb_005993_050 0.0670188637 - - Protein AFR, putative [Ricinus communis]
13 Hb_002518_280 0.0675937095 - - phosphate transporter [Manihot esculenta]
14 Hb_004055_150 0.0686277768 - - conserved hypothetical protein [Ricinus communis]
15 Hb_006960_050 0.069490303 - - PREDICTED: PRKR-interacting protein 1 [Jatropha curcas]
16 Hb_033153_070 0.0710054737 - - PREDICTED: uncharacterized protein LOC105649606 isoform X1 [Jatropha curcas]
17 Hb_007007_060 0.0712642675 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
18 Hb_002823_030 0.0720466901 - - -
19 Hb_003018_130 0.072633736 - - PREDICTED: uncharacterized protein LOC105628777 [Jatropha curcas]
20 Hb_010068_040 0.0728694783 - - PREDICTED: uncharacterized protein LOC105632964 [Jatropha curcas]

Gene co-expression network

sample Hb_033720_010 Hb_033720_010 Hb_023386_020 Hb_023386_020 Hb_033720_010--Hb_023386_020 Hb_000853_230 Hb_000853_230 Hb_033720_010--Hb_000853_230 Hb_000879_200 Hb_000879_200 Hb_033720_010--Hb_000879_200 Hb_002686_250 Hb_002686_250 Hb_033720_010--Hb_002686_250 Hb_000794_050 Hb_000794_050 Hb_033720_010--Hb_000794_050 Hb_006620_020 Hb_006620_020 Hb_033720_010--Hb_006620_020 Hb_004100_080 Hb_004100_080 Hb_023386_020--Hb_004100_080 Hb_000926_190 Hb_000926_190 Hb_023386_020--Hb_000926_190 Hb_002518_280 Hb_002518_280 Hb_023386_020--Hb_002518_280 Hb_156973_010 Hb_156973_010 Hb_023386_020--Hb_156973_010 Hb_023386_020--Hb_000879_200 Hb_000853_230--Hb_006620_020 Hb_004055_150 Hb_004055_150 Hb_000853_230--Hb_004055_150 Hb_000853_230--Hb_000879_200 Hb_000390_180 Hb_000390_180 Hb_000853_230--Hb_000390_180 Hb_001926_030 Hb_001926_030 Hb_000853_230--Hb_001926_030 Hb_000879_200--Hb_001926_030 Hb_000879_200--Hb_006620_020 Hb_001595_030 Hb_001595_030 Hb_000879_200--Hb_001595_030 Hb_000879_200--Hb_002518_280 Hb_131646_010 Hb_131646_010 Hb_002686_250--Hb_131646_010 Hb_002686_250--Hb_004055_150 Hb_003029_030 Hb_003029_030 Hb_002686_250--Hb_003029_030 Hb_004785_100 Hb_004785_100 Hb_002686_250--Hb_004785_100 Hb_002686_250--Hb_001926_030 Hb_002078_110 Hb_002078_110 Hb_002686_250--Hb_002078_110 Hb_000368_020 Hb_000368_020 Hb_000794_050--Hb_000368_020 Hb_000794_050--Hb_000926_190 Hb_001390_110 Hb_001390_110 Hb_000794_050--Hb_001390_110 Hb_000794_050--Hb_000853_230 Hb_000794_050--Hb_006620_020 Hb_006620_020--Hb_004055_150 Hb_006620_020--Hb_001926_030 Hb_054865_100 Hb_054865_100 Hb_006620_020--Hb_054865_100 Hb_000174_110 Hb_000174_110 Hb_006620_020--Hb_000174_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.2354 12.5207 11.6276 9.21651 17.6044 17.2363
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.5444 12.394 9.43059 7.442 10.0716

CAGE analysis