Hb_033834_060

Information

Type -
Description -
Location Contig33834: 45352-52004
Sequence    

Annotation

kegg
ID pop:POPTR_0008s04260g
description POPTRDRAFT_765323; DNA-binding bromodomain-containing family protein
nr
ID XP_002311109.2
description DNA-binding bromodomain-containing family protein [Populus trichocarpa]
swissprot
ID Q84XV2
description Transcription factor GTE1 OS=Arabidopsis thaliana GN=GTE1 PE=2 SV=1
trembl
ID B9HLP1
description DNA-binding bromodomain-containing family protein OS=Populus trichocarpa GN=POPTR_0008s04260g PE=4 SV=2
Gene Ontology
ID GO:0003677
description transcription factor gte6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35391: 45343-51933
cDNA
(Sanger)
(ID:Location)		 020_F03.ab1: 47343-51929

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033834_060 0.0 - - DNA-binding bromodomain-containing family protein [Populus trichocarpa]
2 Hb_020719_030 0.0550505408 - - PREDICTED: ER membrane protein complex subunit 3-like [Jatropha curcas]
3 Hb_004689_050 0.0580862539 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004429_100 0.0591720971 - - PREDICTED: asparagine synthetase domain-containing protein 1 [Jatropha curcas]
5 Hb_009627_010 0.0641574335 - - Protein dom-3, putative [Ricinus communis]
6 Hb_001172_010 0.0666679936 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]
7 Hb_001488_410 0.0674656908 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]
8 Hb_000160_040 0.0679867813 - - PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]
9 Hb_106371_010 0.0706295633 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
10 Hb_103012_010 0.0724160302 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
11 Hb_000023_190 0.0728478579 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
12 Hb_000260_170 0.0736560295 - - PREDICTED: putative zinc transporter At3g08650 [Cucumis sativus]
13 Hb_030116_020 0.0739741551 - - hypothetical protein POPTR_0016s13630g [Populus trichocarpa]
14 Hb_003464_020 0.0743089999 - - srpk, putative [Ricinus communis]
15 Hb_000271_090 0.0758108481 - - WD-repeat protein, putative [Ricinus communis]
16 Hb_002272_180 0.0762513689 - - hypothetical protein JCGZ_23380 [Jatropha curcas]
17 Hb_006114_030 0.0768594629 transcription factor TF Family: SET hypothetical protein CISIN_1g011639mg [Citrus sinensis]
18 Hb_003090_080 0.077506084 transcription factor TF Family: MYB PREDICTED: myb-like protein B [Jatropha curcas]
19 Hb_006252_040 0.0782450557 - - queuine tRNA-ribosyltransferase, putative [Ricinus communis]
20 Hb_004450_010 0.0787190684 - - PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]

Gene co-expression network

sample Hb_033834_060 Hb_033834_060 Hb_020719_030 Hb_020719_030 Hb_033834_060--Hb_020719_030 Hb_004689_050 Hb_004689_050 Hb_033834_060--Hb_004689_050 Hb_004429_100 Hb_004429_100 Hb_033834_060--Hb_004429_100 Hb_009627_010 Hb_009627_010 Hb_033834_060--Hb_009627_010 Hb_001172_010 Hb_001172_010 Hb_033834_060--Hb_001172_010 Hb_001488_410 Hb_001488_410 Hb_033834_060--Hb_001488_410 Hb_002272_180 Hb_002272_180 Hb_020719_030--Hb_002272_180 Hb_020719_030--Hb_001488_410 Hb_004117_130 Hb_004117_130 Hb_020719_030--Hb_004117_130 Hb_000260_170 Hb_000260_170 Hb_020719_030--Hb_000260_170 Hb_103012_010 Hb_103012_010 Hb_020719_030--Hb_103012_010 Hb_004689_050--Hb_004429_100 Hb_001946_010 Hb_001946_010 Hb_004689_050--Hb_001946_010 Hb_000638_120 Hb_000638_120 Hb_004689_050--Hb_000638_120 Hb_000205_100 Hb_000205_100 Hb_004689_050--Hb_000205_100 Hb_100215_010 Hb_100215_010 Hb_004689_050--Hb_100215_010 Hb_000271_090 Hb_000271_090 Hb_004429_100--Hb_000271_090 Hb_006157_020 Hb_006157_020 Hb_004429_100--Hb_006157_020 Hb_004429_100--Hb_001172_010 Hb_000123_210 Hb_000123_210 Hb_004429_100--Hb_000123_210 Hb_000160_040 Hb_000160_040 Hb_009627_010--Hb_000160_040 Hb_000618_030 Hb_000618_030 Hb_009627_010--Hb_000618_030 Hb_009627_010--Hb_001172_010 Hb_010381_060 Hb_010381_060 Hb_009627_010--Hb_010381_060 Hb_002304_090 Hb_002304_090 Hb_009627_010--Hb_002304_090 Hb_001172_010--Hb_002304_090 Hb_007520_030 Hb_007520_030 Hb_001172_010--Hb_007520_030 Hb_001172_010--Hb_000160_040 Hb_004102_140 Hb_004102_140 Hb_001488_410--Hb_004102_140 Hb_003464_020 Hb_003464_020 Hb_001488_410--Hb_003464_020 Hb_000023_190 Hb_000023_190 Hb_001488_410--Hb_000023_190 Hb_006252_040 Hb_006252_040 Hb_001488_410--Hb_006252_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.7176 7.19033 6.31842 8.62787 16.5822 21.927
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.2135 7.71977 9.499 15.466 6.62692

CAGE analysis