Hb_033835_020

Information

Type -
Description -
Location Contig33835: 4385-11663
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID P0CT40
description Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-9 PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033835_020 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_008505_020 0.001052234 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
3 Hb_005531_010 0.0073197596 - - hypothetical protein CICLE_v10033008mg [Citrus clementina]
4 Hb_001741_130 0.020124792 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis sativus]
5 Hb_163268_010 0.0202900939 - - PREDICTED: uncharacterized protein LOC105633410 [Jatropha curcas]
6 Hb_002240_040 0.0342456574 - - -
7 Hb_000756_020 0.0578004008 - - BnaA05g19440D [Brassica napus]
8 Hb_039229_010 0.119010766 - - -
9 Hb_167711_040 0.1532010779 - - PREDICTED: cucumisin-like [Jatropha curcas]
10 Hb_003786_090 0.2064776482 - - hypothetical protein JCGZ_19199 [Jatropha curcas]
11 Hb_008790_050 0.2127955384 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000249_120 0.2209106057 - - PREDICTED: uncharacterized protein LOC104613364 [Nelumbo nucifera]
13 Hb_168925_010 0.2252908416 - - -
14 Hb_000068_030 0.2537861167 - - PREDICTED: uncharacterized protein LOC105636883 [Jatropha curcas]
15 Hb_002725_060 0.2570114473 - - PREDICTED: uncharacterized protein LOC105644961 [Jatropha curcas]
16 Hb_005072_010 0.2584378185 - - PREDICTED: uncharacterized protein LOC105636883 [Jatropha curcas]
17 Hb_004994_110 0.2600398128 - - -
18 Hb_012338_020 0.2652996317 - - -
19 Hb_001141_480 0.2959885478 - - -
20 Hb_001959_150 0.299824554 - - -

Gene co-expression network

sample Hb_033835_020 Hb_033835_020 Hb_008505_020 Hb_008505_020 Hb_033835_020--Hb_008505_020 Hb_005531_010 Hb_005531_010 Hb_033835_020--Hb_005531_010 Hb_001741_130 Hb_001741_130 Hb_033835_020--Hb_001741_130 Hb_163268_010 Hb_163268_010 Hb_033835_020--Hb_163268_010 Hb_002240_040 Hb_002240_040 Hb_033835_020--Hb_002240_040 Hb_000756_020 Hb_000756_020 Hb_033835_020--Hb_000756_020 Hb_008505_020--Hb_005531_010 Hb_008505_020--Hb_001741_130 Hb_008505_020--Hb_163268_010 Hb_008505_020--Hb_002240_040 Hb_008505_020--Hb_000756_020 Hb_005531_010--Hb_002240_040 Hb_005531_010--Hb_001741_130 Hb_005531_010--Hb_163268_010 Hb_005531_010--Hb_000756_020 Hb_001741_130--Hb_163268_010 Hb_001741_130--Hb_000756_020 Hb_001741_130--Hb_002240_040 Hb_163268_010--Hb_000756_020 Hb_163268_010--Hb_002240_040 Hb_039229_010 Hb_039229_010 Hb_002240_040--Hb_039229_010 Hb_000756_020--Hb_002240_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.00785815 0.0151062 0 0

CAGE analysis