Hb_033843_020

Information

Type -
Description -
Location Contig33843: 6321-10891
Sequence    

Annotation

kegg
ID rcu:RCOM_0974010
description lysosomal alpha-mannosidase, putative (EC:3.2.1.24)
nr
ID XP_002530831.1
description lysosomal alpha-mannosidase, putative [Ricinus communis]
swissprot
ID C0HJB3
description Alpha-mannosidase OS=Canavalia ensiformis PE=1 SV=1
trembl
ID B9SXW2
description Alpha-mannosidase OS=Ricinus communis GN=RCOM_0974010 PE=3 SV=1
Gene Ontology
ID GO:0004559
description lysosomal alpha-mannosidase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35399: 7523-7760 , PASA_asmbl_35400: 6573-8096
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033843_020 0.0 - - lysosomal alpha-mannosidase, putative [Ricinus communis]
2 Hb_035726_010 0.0656930195 - - Insulin-degrading enzyme, putative [Ricinus communis]
3 Hb_035726_020 0.0857380381 - - Insulinase (Peptidase family M16) family protein [Theobroma cacao]
4 Hb_001172_030 0.0912890842 - - PREDICTED: protein NRT1/ PTR FAMILY 7.2-like isoform X1 [Jatropha curcas]
5 Hb_022815_020 0.0969427693 - - PREDICTED: uncharacterized protein LOC105650107 [Jatropha curcas]
6 Hb_115414_010 0.1076829862 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
7 Hb_001003_020 0.1096149053 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
8 Hb_026284_010 0.1101166611 - - -
9 Hb_094439_030 0.116593124 - - PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g38780 [Eucalyptus grandis]
10 Hb_003189_030 0.1427438483 - - hypothetical protein Csa_4G304750 [Cucumis sativus]
11 Hb_000659_010 0.1445382673 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
12 Hb_000380_130 0.1471037933 - - Phenylalanine ammonia-lyase, putative [Ricinus communis]
13 Hb_000567_300 0.1560828257 - - PREDICTED: protein YLS9-like [Jatropha curcas]
14 Hb_001959_280 0.156686593 - - PREDICTED: uncharacterized protein LOC105638432 [Jatropha curcas]
15 Hb_046770_010 0.1582891782 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001221_120 0.1614241275 - - cytochrome P450, putative [Ricinus communis]
17 Hb_002890_050 0.1616632477 - - -
18 Hb_014034_010 0.1617674911 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
19 Hb_001514_160 0.1623509109 - - hypothetical protein JCGZ_16070 [Jatropha curcas]
20 Hb_009142_030 0.1626302933 - - UDP-glucosyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_033843_020 Hb_033843_020 Hb_035726_010 Hb_035726_010 Hb_033843_020--Hb_035726_010 Hb_035726_020 Hb_035726_020 Hb_033843_020--Hb_035726_020 Hb_001172_030 Hb_001172_030 Hb_033843_020--Hb_001172_030 Hb_022815_020 Hb_022815_020 Hb_033843_020--Hb_022815_020 Hb_115414_010 Hb_115414_010 Hb_033843_020--Hb_115414_010 Hb_001003_020 Hb_001003_020 Hb_033843_020--Hb_001003_020 Hb_035726_010--Hb_035726_020 Hb_035726_010--Hb_115414_010 Hb_035726_010--Hb_001172_030 Hb_035726_010--Hb_022815_020 Hb_035726_010--Hb_001003_020 Hb_035726_020--Hb_001003_020 Hb_003189_030 Hb_003189_030 Hb_035726_020--Hb_003189_030 Hb_035726_020--Hb_022815_020 Hb_000659_010 Hb_000659_010 Hb_035726_020--Hb_000659_010 Hb_001172_030--Hb_022815_020 Hb_001172_030--Hb_035726_020 Hb_001172_030--Hb_115414_010 Hb_001172_030--Hb_001003_020 Hb_001172_030--Hb_000659_010 Hb_022815_020--Hb_000659_010 Hb_022815_020--Hb_001003_020 Hb_004222_010 Hb_004222_010 Hb_022815_020--Hb_004222_010 Hb_115414_010--Hb_035726_020 Hb_115414_010--Hb_022815_020 Hb_115414_010--Hb_001003_020 Hb_001003_020--Hb_003189_030 Hb_001003_020--Hb_000659_010 Hb_001003_020--Hb_004222_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0268498 0.305152 1.00177 0.853807 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0404589 33.2622 8.42788

CAGE analysis