Hb_034013_020

Information

Type -
Description -
Location Contig34013: 15494-21120
Sequence    

Annotation

kegg
ID rcu:RCOM_0558690
description hypothetical protein
nr
ID XP_012092264.1
description PREDICTED: protein trichome birefringence-like 11 [Jatropha curcas]
swissprot
ID Q5BPJ0
description Protein trichome birefringence-like 11 OS=Arabidopsis thaliana GN=TBL11 PE=2 SV=1
trembl
ID A0A067JN79
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21946 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35609: 17824-20508 , PASA_asmbl_35610: 18442-18794
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_034013_020 0.0 - - PREDICTED: protein trichome birefringence-like 11 [Jatropha curcas]
2 Hb_005162_070 0.1091411532 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001946_330 0.1145850544 - - PREDICTED: transmembrane protein 128 [Jatropha curcas]
4 Hb_001898_160 0.1168581462 - - hypothetical protein POPTR_0004s23390g [Populus trichocarpa]
5 Hb_015198_020 0.1168820509 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002027_040 0.1251176986 - - synapse-associated protein, putative [Ricinus communis]
7 Hb_002799_110 0.1252347042 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
8 Hb_027654_060 0.1259627631 - - RecName: Full=Probable pyridoxal 5'-phosphate synthase subunit PDX1; Short=PLP synthase subunit PDX1; AltName: Full=Ethylene-inducible protein HEVER [Hevea brasiliensis]
9 Hb_029879_130 0.1265597983 - - Derlin-2, putative [Ricinus communis]
10 Hb_003992_170 0.1282732653 - - PREDICTED: glucan endo-1,3-beta-glucosidase 14-like [Populus euphratica]
11 Hb_030565_030 0.1284501688 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like [Jatropha curcas]
12 Hb_000059_050 0.1295231238 - - hypothetical protein JCGZ_25266 [Jatropha curcas]
13 Hb_000047_030 0.1301840538 - - tfiif-alpha, putative [Ricinus communis]
14 Hb_020805_130 0.1305897823 - - protein phosphatase 2c, putative [Ricinus communis]
15 Hb_008695_100 0.1305988716 - - PREDICTED: mediator of RNA polymerase II transcription subunit 1 isoform X2 [Jatropha curcas]
16 Hb_007904_260 0.1325501627 - - PREDICTED: uncharacterized protein LOC105644715 [Jatropha curcas]
17 Hb_003291_010 0.1338842233 - - ATP-dependent protease La, putative [Ricinus communis]
18 Hb_001279_340 0.1345254966 - - glycerol-3-phosphate dehydrogenase [Jatropha curcas]
19 Hb_011909_100 0.1350823855 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000836_040 0.1354171306 - - PREDICTED: AT-rich interactive domain-containing protein 1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_034013_020 Hb_034013_020 Hb_005162_070 Hb_005162_070 Hb_034013_020--Hb_005162_070 Hb_001946_330 Hb_001946_330 Hb_034013_020--Hb_001946_330 Hb_001898_160 Hb_001898_160 Hb_034013_020--Hb_001898_160 Hb_015198_020 Hb_015198_020 Hb_034013_020--Hb_015198_020 Hb_002027_040 Hb_002027_040 Hb_034013_020--Hb_002027_040 Hb_002799_110 Hb_002799_110 Hb_034013_020--Hb_002799_110 Hb_005162_070--Hb_002027_040 Hb_000260_570 Hb_000260_570 Hb_005162_070--Hb_000260_570 Hb_008695_100 Hb_008695_100 Hb_005162_070--Hb_008695_100 Hb_011030_020 Hb_011030_020 Hb_005162_070--Hb_011030_020 Hb_001140_220 Hb_001140_220 Hb_005162_070--Hb_001140_220 Hb_013607_040 Hb_013607_040 Hb_005162_070--Hb_013607_040 Hb_000059_050 Hb_000059_050 Hb_001946_330--Hb_000059_050 Hb_000853_190 Hb_000853_190 Hb_001946_330--Hb_000853_190 Hb_003992_170 Hb_003992_170 Hb_001946_330--Hb_003992_170 Hb_001545_100 Hb_001545_100 Hb_001946_330--Hb_001545_100 Hb_000436_130 Hb_000436_130 Hb_001946_330--Hb_000436_130 Hb_009339_030 Hb_009339_030 Hb_001946_330--Hb_009339_030 Hb_000047_030 Hb_000047_030 Hb_001898_160--Hb_000047_030 Hb_082609_010 Hb_082609_010 Hb_001898_160--Hb_082609_010 Hb_000236_070 Hb_000236_070 Hb_001898_160--Hb_000236_070 Hb_000143_030 Hb_000143_030 Hb_001898_160--Hb_000143_030 Hb_011909_100 Hb_011909_100 Hb_001898_160--Hb_011909_100 Hb_001898_160--Hb_015198_020 Hb_000574_390 Hb_000574_390 Hb_015198_020--Hb_000574_390 Hb_015198_020--Hb_000047_030 Hb_011242_040 Hb_011242_040 Hb_015198_020--Hb_011242_040 Hb_013405_030 Hb_013405_030 Hb_015198_020--Hb_013405_030 Hb_003142_020 Hb_003142_020 Hb_015198_020--Hb_003142_020 Hb_020805_130 Hb_020805_130 Hb_002027_040--Hb_020805_130 Hb_004079_030 Hb_004079_030 Hb_002027_040--Hb_004079_030 Hb_000567_120 Hb_000567_120 Hb_002027_040--Hb_000567_120 Hb_148113_010 Hb_148113_010 Hb_002027_040--Hb_148113_010 Hb_002027_040--Hb_000260_570 Hb_000614_220 Hb_000614_220 Hb_002799_110--Hb_000614_220 Hb_027654_060 Hb_027654_060 Hb_002799_110--Hb_027654_060 Hb_000614_160 Hb_000614_160 Hb_002799_110--Hb_000614_160 Hb_003086_150 Hb_003086_150 Hb_002799_110--Hb_003086_150 Hb_000260_030 Hb_000260_030 Hb_002799_110--Hb_000260_030 Hb_002490_020 Hb_002490_020 Hb_002799_110--Hb_002490_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.72828 4.41036 4.73573 5.07872 4.30374 5.54728
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.3179 9.91803 19.8795 3.34156 11.5193

CAGE analysis