Hb_034083_010

Information

Type -
Description -
Location Contig34083: 17279-31081
Sequence    

Annotation

kegg
ID rcu:RCOM_0814110
description hypothetical protein
nr
ID XP_002518800.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID O15050
description TPR and ankyrin repeat-containing protein 1 OS=Homo sapiens GN=TRANK1 PE=2 SV=4
trembl
ID B9RY33
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0814110 PE=4 SV=1
Gene Ontology
ID GO:0005524
description tpr and ankyrin repeat-containing protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35640: 19343-19567 , PASA_asmbl_35641: 21211-21510 , PASA_asmbl_35642: 21684-22115 , PASA_asmbl_35644: 22801-24083 , PASA_asmbl_35647: 28138-28329 , PASA_asmbl_35648: 28359-29496 , PASA_asmbl_35649: 29671-30740
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_034083_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005227_070 0.0797069992 - - serine/threonine protein kinase, putative [Ricinus communis]
3 Hb_012055_020 0.0972353321 - - PREDICTED: metal transporter Nramp3 [Jatropha curcas]
4 Hb_032531_030 0.1166890211 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
5 Hb_000984_180 0.1197870516 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO3 isoform X1 [Jatropha curcas]
6 Hb_001040_170 0.1311418479 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21705, mitochondrial isoform X1 [Jatropha curcas]
7 Hb_000230_110 0.1321670793 - - PREDICTED: uncharacterized protein LOC105647634 [Jatropha curcas]
8 Hb_128548_020 0.1324719166 - - PREDICTED: transmembrane protein 56-like [Jatropha curcas]
9 Hb_002200_110 0.1338109962 - - conserved hypothetical protein [Ricinus communis]
10 Hb_007447_010 0.1339309202 - - PREDICTED: CBS domain-containing protein CBSCBSPB3 isoform X3 [Jatropha curcas]
11 Hb_073171_110 0.1342165637 - - PREDICTED: lysM domain receptor-like kinase 3 [Jatropha curcas]
12 Hb_001341_040 0.1349054492 - - hypothetical protein JCGZ_05578 [Jatropha curcas]
13 Hb_001416_040 0.1353536844 - - acid phosphatase, putative [Ricinus communis]
14 Hb_000161_030 0.137374806 transcription factor TF Family: TCP PREDICTED: transcription factor TCP8 [Jatropha curcas]
15 Hb_000599_120 0.1379188605 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT34 [Jatropha curcas]
16 Hb_000057_060 0.1386415251 - - PREDICTED: uncharacterized protein LOC105634990 isoform X4 [Jatropha curcas]
17 Hb_001115_050 0.1390311051 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
18 Hb_154381_050 0.141126542 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004156_060 0.1425396254 - - neutral/alkaline invertase 1 [Hevea brasiliensis]
20 Hb_012340_010 0.1432841695 - - PREDICTED: B-cell receptor-associated protein 31 [Jatropha curcas]

Gene co-expression network

sample Hb_034083_010 Hb_034083_010 Hb_005227_070 Hb_005227_070 Hb_034083_010--Hb_005227_070 Hb_012055_020 Hb_012055_020 Hb_034083_010--Hb_012055_020 Hb_032531_030 Hb_032531_030 Hb_034083_010--Hb_032531_030 Hb_000984_180 Hb_000984_180 Hb_034083_010--Hb_000984_180 Hb_001040_170 Hb_001040_170 Hb_034083_010--Hb_001040_170 Hb_000230_110 Hb_000230_110 Hb_034083_010--Hb_000230_110 Hb_005227_070--Hb_012055_020 Hb_000291_280 Hb_000291_280 Hb_005227_070--Hb_000291_280 Hb_002997_100 Hb_002997_100 Hb_005227_070--Hb_002997_100 Hb_098993_010 Hb_098993_010 Hb_005227_070--Hb_098993_010 Hb_000088_040 Hb_000088_040 Hb_005227_070--Hb_000088_040 Hb_176022_020 Hb_176022_020 Hb_012055_020--Hb_176022_020 Hb_012055_020--Hb_000984_180 Hb_012055_020--Hb_000230_110 Hb_073171_110 Hb_073171_110 Hb_012055_020--Hb_073171_110 Hb_066807_010 Hb_066807_010 Hb_032531_030--Hb_066807_010 Hb_014834_120 Hb_014834_120 Hb_032531_030--Hb_014834_120 Hb_001902_050 Hb_001902_050 Hb_032531_030--Hb_001902_050 Hb_002038_060 Hb_002038_060 Hb_032531_030--Hb_002038_060 Hb_000057_060 Hb_000057_060 Hb_032531_030--Hb_000057_060 Hb_026048_100 Hb_026048_100 Hb_032531_030--Hb_026048_100 Hb_000599_120 Hb_000599_120 Hb_000984_180--Hb_000599_120 Hb_000078_130 Hb_000078_130 Hb_000984_180--Hb_000078_130 Hb_000984_180--Hb_000057_060 Hb_001416_040 Hb_001416_040 Hb_000984_180--Hb_001416_040 Hb_001433_170 Hb_001433_170 Hb_000984_180--Hb_001433_170 Hb_005288_120 Hb_005288_120 Hb_000984_180--Hb_005288_120 Hb_000107_100 Hb_000107_100 Hb_001040_170--Hb_000107_100 Hb_006091_030 Hb_006091_030 Hb_001040_170--Hb_006091_030 Hb_017168_010 Hb_017168_010 Hb_001040_170--Hb_017168_010 Hb_000327_240 Hb_000327_240 Hb_001040_170--Hb_000327_240 Hb_005237_010 Hb_005237_010 Hb_001040_170--Hb_005237_010 Hb_000340_510 Hb_000340_510 Hb_001040_170--Hb_000340_510 Hb_003404_030 Hb_003404_030 Hb_000230_110--Hb_003404_030 Hb_000230_110--Hb_176022_020 Hb_006029_010 Hb_006029_010 Hb_000230_110--Hb_006029_010 Hb_004156_060 Hb_004156_060 Hb_000230_110--Hb_004156_060 Hb_000230_110--Hb_000088_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.6233 2.06988 0.949191 2.52289 39.7308 28.4089
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.8142 11.469 22.1405 5.14327 3.99139

CAGE analysis