Hb_034083_020

Information

Type -
Description -
Location Contig34083: 32742-33746
Sequence    

Annotation

kegg
ID rcu:RCOM_0814120
description hypothetical protein
nr
ID XP_002518801.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9LS48
description protein SLOW GREEN 1, chloroplastic OS=Arabidopsis thaliana GN=SG1 PE=1 SV=1
trembl
ID B9RY34
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0814120 PE=4 SV=1
Gene Ontology
ID GO:0005515
description protein slow green chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 013_O11.ab1: 33157-33845

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_034083_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000909_080 0.0664845644 - - PREDICTED: inosine-5'-monophosphate dehydrogenase 2-like [Jatropha curcas]
3 Hb_001159_010 0.0714973989 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001951_060 0.0819910457 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG14 [Jatropha curcas]
5 Hb_000358_020 0.0926384149 - - PREDICTED: uncharacterized protein C05D11.7-like [Jatropha curcas]
6 Hb_005218_080 0.0927226504 - - PREDICTED: branched-chain-amino-acid aminotransferase 3, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_000365_010 0.0986017686 - - hypothetical protein POPTR_0006s10920g [Populus trichocarpa]
8 Hb_003440_020 0.1058924401 - - PREDICTED: serine protease SPPA, chloroplastic isoform X2 [Jatropha curcas]
9 Hb_011537_060 0.1104347319 - - UPF0061 protein azo1574 [Morus notabilis]
10 Hb_000035_260 0.1114618174 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
11 Hb_005016_010 0.1124181237 - - AMP dependent CoA ligase, putative [Ricinus communis]
12 Hb_000258_050 0.1140545416 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription repressor VAL2 isoform X2 [Jatropha curcas]
13 Hb_055690_010 0.1147330913 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
14 Hb_004218_180 0.1174687273 - - PREDICTED: flowering time control protein FY isoform X2 [Jatropha curcas]
15 Hb_000896_050 0.1178419343 - - PREDICTED: uncharacterized protein LOC105637668 [Jatropha curcas]
16 Hb_180378_010 0.1181577004 - - PREDICTED: 4-alpha-glucanotransferase, chloroplastic/amyloplastic [Populus euphratica]
17 Hb_084670_010 0.1197893248 - - PREDICTED: thiamine biosynthetic bifunctional enzyme TH1, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_009615_060 0.1206165069 - - PREDICTED: prolyl endopeptidase-like [Jatropha curcas]
19 Hb_003517_070 0.1208789656 - - PREDICTED: protein transport protein Sec24-like At3g07100 [Jatropha curcas]
20 Hb_001799_060 0.12186491 - - Rab6 [Hevea brasiliensis]

Gene co-expression network

sample Hb_034083_020 Hb_034083_020 Hb_000909_080 Hb_000909_080 Hb_034083_020--Hb_000909_080 Hb_001159_010 Hb_001159_010 Hb_034083_020--Hb_001159_010 Hb_001951_060 Hb_001951_060 Hb_034083_020--Hb_001951_060 Hb_000358_020 Hb_000358_020 Hb_034083_020--Hb_000358_020 Hb_005218_080 Hb_005218_080 Hb_034083_020--Hb_005218_080 Hb_000365_010 Hb_000365_010 Hb_034083_020--Hb_000365_010 Hb_000909_080--Hb_000358_020 Hb_003440_020 Hb_003440_020 Hb_000909_080--Hb_003440_020 Hb_055690_010 Hb_055690_010 Hb_000909_080--Hb_055690_010 Hb_000909_080--Hb_000365_010 Hb_001105_100 Hb_001105_100 Hb_000909_080--Hb_001105_100 Hb_084670_010 Hb_084670_010 Hb_001159_010--Hb_084670_010 Hb_001159_010--Hb_000909_080 Hb_001159_010--Hb_000365_010 Hb_004218_180 Hb_004218_180 Hb_001159_010--Hb_004218_180 Hb_011224_050 Hb_011224_050 Hb_001159_010--Hb_011224_050 Hb_001301_280 Hb_001301_280 Hb_001951_060--Hb_001301_280 Hb_002486_080 Hb_002486_080 Hb_001951_060--Hb_002486_080 Hb_007416_070 Hb_007416_070 Hb_001951_060--Hb_007416_070 Hb_001951_060--Hb_000365_010 Hb_005016_010 Hb_005016_010 Hb_001951_060--Hb_005016_010 Hb_000358_020--Hb_055690_010 Hb_000358_020--Hb_003440_020 Hb_000358_020--Hb_005218_080 Hb_000035_350 Hb_000035_350 Hb_000358_020--Hb_000035_350 Hb_030736_040 Hb_030736_040 Hb_000358_020--Hb_030736_040 Hb_005218_080--Hb_003440_020 Hb_005218_080--Hb_000909_080 Hb_008147_080 Hb_008147_080 Hb_005218_080--Hb_008147_080 Hb_171718_010 Hb_171718_010 Hb_005218_080--Hb_171718_010 Hb_002762_110 Hb_002762_110 Hb_005218_080--Hb_002762_110 Hb_000365_010--Hb_001301_280 Hb_000365_010--Hb_000358_020 Hb_001141_240 Hb_001141_240 Hb_000365_010--Hb_001141_240 Hb_000365_010--Hb_011224_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.7788 13.6985 19.8293 30.7973 6.62337 10.4632
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.95728 22.3005 10.648 35.5653 41.7467

CAGE analysis