Hb_034168_010

Information

Type -
Description -
Location Contig34168: 14953-15393
Sequence    

Annotation

kegg
ID -
description -
nr
ID WP_022187435.1
description hypothetical protein [Azospirillum sp. CAG:260]
swissprot
ID -
description -
trembl
ID A0A0A9RWP6
description Uncharacterized protein OS=Arundo donax PE=4 SV=1
Gene Ontology
ID GO:0009507
description conserved protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_034168_010 0.0 - - hypothetical protein [Azospirillum sp. CAG:260]
2 Hb_000920_020 0.1151094213 - - OSJNBa0004L19.22 [Oryza sativa Japonica Group]
3 Hb_189099_020 0.1195911128 - - NADH dehydrogenase subunit 9 (mitochondrion) [Hevea brasiliensis]
4 Hb_004374_090 0.1268049569 transcription factor TF Family: HB PREDICTED: homeobox protein BEL1 homolog [Populus euphratica]
5 Hb_062192_020 0.1308450522 - - cytochrome c biogenesis FN (mitochondrion) [Hevea brasiliensis]
6 Hb_002551_030 0.1369832554 - - gypsy/Ty-3 retroelement polyprotein; 69905-74404 [Arabidopsis thaliana]
7 Hb_062192_030 0.1393909032 - - ribosomal protein S1 (mitochondrion) [Hevea brasiliensis]
8 Hb_034168_070 0.140061232 - - ATP synthase F1 subunit 1 (mitochondrion) [Hevea brasiliensis]
9 Hb_001338_080 0.1408545643 - - NADH-plastoquinone oxidoreductase subunit 2 (chloroplast) [Tamarindus indica]
10 Hb_042463_070 0.1447076453 - - 60S ribosomal protein L16, putative [Ricinus communis]
11 Hb_027638_010 0.1510973563 - - Protein KES1, putative [Ricinus communis]
12 Hb_088080_030 0.1527080076 - - ribosomal protein S4 [Hevea brasiliensis]
13 Hb_006925_030 0.154884639 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18840-like [Populus euphratica]
14 Hb_062273_010 0.1566938601 - - ATP synthase F0 subunit 9 [Chara vulgaris]
15 Hb_003125_100 0.1574975692 - - NAD(P)-binding Rossmann-fold superfamily protein [Theobroma cacao]
16 Hb_012528_040 0.1596607966 - - -
17 Hb_000029_380 0.1614140908 - - conserved hypothetical protein [Ricinus communis]
18 Hb_185274_020 0.162415729 - - Ycf2 (chloroplast) [Andrographis paniculata]
19 Hb_077242_020 0.163302259 - - ribosomal protein S4 (mitochondrion) [Ricinus communis]
20 Hb_000156_240 0.1640547428 - - hypothetical protein MPER_07741 [Moniliophthora perniciosa FA553]

Gene co-expression network

sample Hb_034168_010 Hb_034168_010 Hb_000920_020 Hb_000920_020 Hb_034168_010--Hb_000920_020 Hb_189099_020 Hb_189099_020 Hb_034168_010--Hb_189099_020 Hb_004374_090 Hb_004374_090 Hb_034168_010--Hb_004374_090 Hb_062192_020 Hb_062192_020 Hb_034168_010--Hb_062192_020 Hb_002551_030 Hb_002551_030 Hb_034168_010--Hb_002551_030 Hb_062192_030 Hb_062192_030 Hb_034168_010--Hb_062192_030 Hb_042463_070 Hb_042463_070 Hb_000920_020--Hb_042463_070 Hb_088080_030 Hb_088080_030 Hb_000920_020--Hb_088080_030 Hb_000920_020--Hb_189099_020 Hb_041813_030 Hb_041813_030 Hb_000920_020--Hb_041813_030 Hb_019253_040 Hb_019253_040 Hb_000920_020--Hb_019253_040 Hb_189099_020--Hb_088080_030 Hb_189099_020--Hb_062192_030 Hb_189099_020--Hb_041813_030 Hb_001338_080 Hb_001338_080 Hb_189099_020--Hb_001338_080 Hb_023738_010 Hb_023738_010 Hb_004374_090--Hb_023738_010 Hb_007201_010 Hb_007201_010 Hb_004374_090--Hb_007201_010 Hb_168319_040 Hb_168319_040 Hb_004374_090--Hb_168319_040 Hb_093388_010 Hb_093388_010 Hb_004374_090--Hb_093388_010 Hb_005678_030 Hb_005678_030 Hb_004374_090--Hb_005678_030 Hb_062192_020--Hb_002551_030 Hb_027638_010 Hb_027638_010 Hb_062192_020--Hb_027638_010 Hb_001508_010 Hb_001508_010 Hb_062192_020--Hb_001508_010 Hb_171685_070 Hb_171685_070 Hb_062192_020--Hb_171685_070 Hb_001490_020 Hb_001490_020 Hb_062192_020--Hb_001490_020 Hb_002551_030--Hb_027638_010 Hb_002551_030--Hb_001508_010 Hb_002551_030--Hb_171685_070 Hb_077242_020 Hb_077242_020 Hb_002551_030--Hb_077242_020 Hb_062192_030--Hb_041813_030 Hb_062192_030--Hb_042463_070 Hb_062192_030--Hb_001338_080 Hb_006040_160 Hb_006040_160 Hb_062192_030--Hb_006040_160 Hb_034168_070 Hb_034168_070 Hb_062192_030--Hb_034168_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.2987 84.4638 133.958 42.757 8.72038 29.6447
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.98729 5.09625 20.2132 85.5191 1783.84

CAGE analysis