Hb_034235_010

Information

Type -
Description -
Location Contig34235: 5916-7361
Sequence    

Annotation

kegg
ID mdm:103454565
description putative UPF0481 protein At3g02645
nr
ID XP_012085983.1
description PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
swissprot
ID Q9SD53
description UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=2 SV=1
trembl
ID A0A067JTY3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22474 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35762: 6137-6888
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_034235_010 0.0 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
2 Hb_149644_030 0.0553363761 - - hypothetical protein POPTR_0005s18750g [Populus trichocarpa]
3 Hb_001266_010 0.0618971471 - - PREDICTED: uncharacterized protein LOC101206474 [Cucumis sativus]
4 Hb_041433_010 0.0642924279 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
5 Hb_009476_030 0.0650482643 - - fatty acid desaturase [Manihot esculenta]
6 Hb_002704_060 0.0654623563 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
7 Hb_000152_350 0.0665596217 - - PREDICTED: enolase [Jatropha curcas]
8 Hb_002078_330 0.0667926993 - - lipid binding protein, putative [Ricinus communis]
9 Hb_000608_270 0.067182751 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005345_020 0.0761370707 - - Root phototropism protein, putative [Ricinus communis]
11 Hb_000005_060 0.0771018447 - - PREDICTED: uncharacterized protein At1g08160 [Jatropha curcas]
12 Hb_008147_020 0.0777848181 - - hypothetical protein JCGZ_25652 [Jatropha curcas]
13 Hb_002043_020 0.0801388032 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH87 [Jatropha curcas]
14 Hb_001975_120 0.081953574 - - chlorophyll a/b binding protein type II [Glycine max]
15 Hb_001571_100 0.0828364017 - - chlorophyll A-B binding family protein [Populus trichocarpa]
16 Hb_000069_440 0.0831099711 - - PREDICTED: uncharacterized protein LOC105642861 [Jatropha curcas]
17 Hb_002276_220 0.0841195733 - - PREDICTED: uncharacterized protein LOC105640684 isoform X2 [Jatropha curcas]
18 Hb_001789_220 0.0873043407 - - PREDICTED: BAHD acyltransferase DCR-like [Jatropha curcas]
19 Hb_002028_020 0.0889173604 - - acyltransferase, putative [Ricinus communis]
20 Hb_007681_010 0.0890586778 - - hypothetical protein RCOM_2128750 [Ricinus communis]

Gene co-expression network

sample Hb_034235_010 Hb_034235_010 Hb_149644_030 Hb_149644_030 Hb_034235_010--Hb_149644_030 Hb_001266_010 Hb_001266_010 Hb_034235_010--Hb_001266_010 Hb_041433_010 Hb_041433_010 Hb_034235_010--Hb_041433_010 Hb_009476_030 Hb_009476_030 Hb_034235_010--Hb_009476_030 Hb_002704_060 Hb_002704_060 Hb_034235_010--Hb_002704_060 Hb_000152_350 Hb_000152_350 Hb_034235_010--Hb_000152_350 Hb_002028_020 Hb_002028_020 Hb_149644_030--Hb_002028_020 Hb_001488_230 Hb_001488_230 Hb_149644_030--Hb_001488_230 Hb_001571_100 Hb_001571_100 Hb_149644_030--Hb_001571_100 Hb_009588_010 Hb_009588_010 Hb_149644_030--Hb_009588_010 Hb_000042_280 Hb_000042_280 Hb_149644_030--Hb_000042_280 Hb_000005_060 Hb_000005_060 Hb_001266_010--Hb_000005_060 Hb_011013_040 Hb_011013_040 Hb_001266_010--Hb_011013_040 Hb_001975_120 Hb_001975_120 Hb_001266_010--Hb_001975_120 Hb_000069_440 Hb_000069_440 Hb_001266_010--Hb_000069_440 Hb_001266_010--Hb_009476_030 Hb_005345_020 Hb_005345_020 Hb_041433_010--Hb_005345_020 Hb_001789_220 Hb_001789_220 Hb_041433_010--Hb_001789_220 Hb_041433_010--Hb_001571_100 Hb_041433_010--Hb_009476_030 Hb_000608_270 Hb_000608_270 Hb_041433_010--Hb_000608_270 Hb_007681_010 Hb_007681_010 Hb_041433_010--Hb_007681_010 Hb_009476_030--Hb_005345_020 Hb_002042_090 Hb_002042_090 Hb_009476_030--Hb_002042_090 Hb_009476_030--Hb_001975_120 Hb_001675_090 Hb_001675_090 Hb_009476_030--Hb_001675_090 Hb_009476_030--Hb_001789_220 Hb_002078_330 Hb_002078_330 Hb_002704_060--Hb_002078_330 Hb_008147_020 Hb_008147_020 Hb_002704_060--Hb_008147_020 Hb_002043_020 Hb_002043_020 Hb_002704_060--Hb_002043_020 Hb_000538_090 Hb_000538_090 Hb_002704_060--Hb_000538_090 Hb_143629_180 Hb_143629_180 Hb_002704_060--Hb_143629_180 Hb_000152_350--Hb_002078_330 Hb_000424_130 Hb_000424_130 Hb_000152_350--Hb_000424_130 Hb_029920_010 Hb_029920_010 Hb_000152_350--Hb_029920_010 Hb_000152_350--Hb_149644_030 Hb_000300_110 Hb_000300_110 Hb_000152_350--Hb_000300_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0142956 0.554819 13.1302 6.63405 0 0.0771164
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.174011 10.8143

CAGE analysis