Hb_034243_020

Information

Type -
Description -
Location Contig34243: 9169-15112
Sequence    

Annotation

kegg
ID rcu:RCOM_0465180
description hypothetical protein
nr
ID XP_012089590.1
description PREDICTED: elongator complex protein 1 isoform X1 [Jatropha curcas]
swissprot
ID Q9FNA4
description Elongator complex protein 1 OS=Arabidopsis thaliana GN=ELP1 PE=1 SV=1
trembl
ID A0A067LCL7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01498 PE=4 SV=1
Gene Ontology
ID GO:0005515
description iki3 family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35766: 9317-9815 , PASA_asmbl_35769: 11379-11624 , PASA_asmbl_35770: 12059-12539 , PASA_asmbl_35771: 12738-14985
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_034243_020 0.0 - - PREDICTED: elongator complex protein 1 isoform X1 [Jatropha curcas]
2 Hb_004543_030 0.0558023456 - - PREDICTED: FIP1[V]-like protein [Jatropha curcas]
3 Hb_004884_010 0.0571789236 - - PREDICTED: pre-mRNA-splicing factor CWC22 homolog [Jatropha curcas]
4 Hb_001493_040 0.060233753 - - PREDICTED: FACT complex subunit SPT16-like [Jatropha curcas]
5 Hb_007576_120 0.0621958391 - - NBS-LRR disease resistance protein NBS49 [Dimocarpus longan]
6 Hb_010315_090 0.0679383861 - - suppressor of ty, putative [Ricinus communis]
7 Hb_133047_010 0.068154717 - - xanthine dehydrogenase, putative [Ricinus communis]
8 Hb_000997_030 0.0706133807 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
9 Hb_004480_040 0.0711702776 - - PREDICTED: DDB1- and CUL4-associated factor homolog 1 isoform X2 [Jatropha curcas]
10 Hb_030565_090 0.0720259038 - - PREDICTED: DNA repair protein RAD50 [Jatropha curcas]
11 Hb_000264_100 0.0764313772 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002301_080 0.0769782612 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105649589 isoform X2 [Jatropha curcas]
13 Hb_000304_050 0.0773042942 transcription factor TF Family: GRAS PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
14 Hb_000345_150 0.0779667506 - - PREDICTED: uncharacterized protein LOC105647517 isoform X1 [Jatropha curcas]
15 Hb_140049_020 0.0780417707 - - PREDICTED: cell division cycle protein 73 [Jatropha curcas]
16 Hb_002022_070 0.0782446161 - - PREDICTED: histidine--tRNA ligase [Jatropha curcas]
17 Hb_000012_140 0.0791798473 - - conserved hypothetical protein [Ricinus communis]
18 Hb_148909_030 0.0799737419 - - PREDICTED: uncharacterized protein LOC105638192 isoform X1 [Jatropha curcas]
19 Hb_002524_040 0.0807725874 - - PREDICTED: FIP1[V]-like protein [Jatropha curcas]
20 Hb_000032_010 0.0810807374 - - crooked neck protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_034243_020 Hb_034243_020 Hb_004543_030 Hb_004543_030 Hb_034243_020--Hb_004543_030 Hb_004884_010 Hb_004884_010 Hb_034243_020--Hb_004884_010 Hb_001493_040 Hb_001493_040 Hb_034243_020--Hb_001493_040 Hb_007576_120 Hb_007576_120 Hb_034243_020--Hb_007576_120 Hb_010315_090 Hb_010315_090 Hb_034243_020--Hb_010315_090 Hb_133047_010 Hb_133047_010 Hb_034243_020--Hb_133047_010 Hb_004543_030--Hb_007576_120 Hb_002524_040 Hb_002524_040 Hb_004543_030--Hb_002524_040 Hb_004718_010 Hb_004718_010 Hb_004543_030--Hb_004718_010 Hb_000997_030 Hb_000997_030 Hb_004543_030--Hb_000997_030 Hb_004543_030--Hb_010315_090 Hb_004884_010--Hb_133047_010 Hb_004884_010--Hb_010315_090 Hb_002022_070 Hb_002022_070 Hb_004884_010--Hb_002022_070 Hb_148909_030 Hb_148909_030 Hb_004884_010--Hb_148909_030 Hb_004884_010--Hb_004543_030 Hb_001417_050 Hb_001417_050 Hb_001493_040--Hb_001417_050 Hb_000935_090 Hb_000935_090 Hb_001493_040--Hb_000935_090 Hb_001493_040--Hb_010315_090 Hb_000160_290 Hb_000160_290 Hb_001493_040--Hb_000160_290 Hb_002422_050 Hb_002422_050 Hb_001493_040--Hb_002422_050 Hb_007576_120--Hb_001493_040 Hb_000139_090 Hb_000139_090 Hb_007576_120--Hb_000139_090 Hb_005539_090 Hb_005539_090 Hb_007576_120--Hb_005539_090 Hb_000012_140 Hb_000012_140 Hb_007576_120--Hb_000012_140 Hb_000329_130 Hb_000329_130 Hb_010315_090--Hb_000329_130 Hb_010315_090--Hb_001417_050 Hb_019153_020 Hb_019153_020 Hb_010315_090--Hb_019153_020 Hb_140049_020 Hb_140049_020 Hb_010315_090--Hb_140049_020 Hb_111985_080 Hb_111985_080 Hb_133047_010--Hb_111985_080 Hb_002392_030 Hb_002392_030 Hb_133047_010--Hb_002392_030 Hb_002301_080 Hb_002301_080 Hb_133047_010--Hb_002301_080 Hb_133047_010--Hb_148909_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.2862 12.2128 4.43227 3.03757 10.4849 11.9178
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.65006 3.34882 4.89544 7.28834 6.50129

CAGE analysis