Hb_034243_040

Information

Type transcription factor
Description TF Family: B3
Location Contig34243: 16941-19447
Sequence    

Annotation

kegg
ID tcc:TCM_000516
description AP2/B3-like transcriptional factor family protein, putative
nr
ID XP_012079137.1
description PREDICTED: B3 domain-containing transcription factor VRN1-like [Jatropha curcas]
swissprot
ID Q8L3W1
description B3 domain-containing transcription factor VRN1 OS=Arabidopsis thaliana GN=VRN1 PE=1 SV=1
trembl
ID A0A067KA42
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12309 PE=4 SV=1
Gene Ontology
ID GO:0003677
description ap2 b3-like transcriptional factor family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35772: 16759-19480
cDNA
(Sanger)
(ID:Location)		 018_D05.ab1: 17468-19480

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_034243_040 0.0 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1-like [Jatropha curcas]
2 Hb_001089_070 0.076935919 - - PREDICTED: conserved oligomeric Golgi complex subunit 3 [Jatropha curcas]
3 Hb_002311_310 0.0859915444 - - PREDICTED: uncharacterized protein LOC100246622 [Vitis vinifera]
4 Hb_000847_080 0.0901699487 - - PREDICTED: HAUS augmin-like complex subunit 3 [Jatropha curcas]
5 Hb_000563_420 0.0915566059 - - PREDICTED: acyl-CoA dehydrogenase family member 10 [Jatropha curcas]
6 Hb_000098_140 0.0915704863 - - hypothetical protein JCGZ_04989 [Jatropha curcas]
7 Hb_000002_120 0.0939633444 - - PREDICTED: uncharacterized protein LOC105782064 [Gossypium raimondii]
8 Hb_000115_280 0.0941513482 - - PREDICTED: glutamine--tRNA ligase [Jatropha curcas]
9 Hb_002067_030 0.0944996514 - - PREDICTED: poly(ADP-ribose) glycohydrolase 1-like isoform X2 [Jatropha curcas]
10 Hb_132840_010 0.0957901783 - - serine/threonine-protein kinase, putative [Ricinus communis]
11 Hb_002374_230 0.096726558 - - PREDICTED: centromere-associated protein E [Jatropha curcas]
12 Hb_027472_120 0.0981646239 - - PREDICTED: thiosulfate/3-mercaptopyruvate sulfurtransferase 1, mitochondrial isoform X1 [Jatropha curcas]
13 Hb_000523_080 0.0988449389 - - PREDICTED: LOW QUALITY PROTEIN: beta-catenin-like protein 1 [Jatropha curcas]
14 Hb_000085_140 0.0989588723 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105633025 [Jatropha curcas]
15 Hb_002304_060 0.0994704134 - - PREDICTED: glucosidase 2 subunit beta [Jatropha curcas]
16 Hb_000371_010 0.1017213104 - - PREDICTED: probable Xaa-Pro aminopeptidase P isoform X1 [Jatropha curcas]
17 Hb_002027_060 0.1021830295 - - PREDICTED: exosome complex component RRP4 [Jatropha curcas]
18 Hb_143629_150 0.1032187833 - - PREDICTED: flap endonuclease 1 isoform X2 [Prunus mume]
19 Hb_031284_010 0.1048076843 - - PREDICTED: uncharacterized protein LOC105633543 [Jatropha curcas]
20 Hb_138435_010 0.1059874745 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_034243_040 Hb_034243_040 Hb_001089_070 Hb_001089_070 Hb_034243_040--Hb_001089_070 Hb_002311_310 Hb_002311_310 Hb_034243_040--Hb_002311_310 Hb_000847_080 Hb_000847_080 Hb_034243_040--Hb_000847_080 Hb_000563_420 Hb_000563_420 Hb_034243_040--Hb_000563_420 Hb_000098_140 Hb_000098_140 Hb_034243_040--Hb_000098_140 Hb_000002_120 Hb_000002_120 Hb_034243_040--Hb_000002_120 Hb_016777_040 Hb_016777_040 Hb_001089_070--Hb_016777_040 Hb_005289_040 Hb_005289_040 Hb_001089_070--Hb_005289_040 Hb_000603_030 Hb_000603_030 Hb_001089_070--Hb_000603_030 Hb_001005_030 Hb_001005_030 Hb_001089_070--Hb_001005_030 Hb_021943_080 Hb_021943_080 Hb_001089_070--Hb_021943_080 Hb_005588_090 Hb_005588_090 Hb_001089_070--Hb_005588_090 Hb_027472_120 Hb_027472_120 Hb_002311_310--Hb_027472_120 Hb_002311_310--Hb_001005_030 Hb_000922_020 Hb_000922_020 Hb_002311_310--Hb_000922_020 Hb_032202_080 Hb_032202_080 Hb_002311_310--Hb_032202_080 Hb_002311_310--Hb_001089_070 Hb_007929_080 Hb_007929_080 Hb_002311_310--Hb_007929_080 Hb_077026_010 Hb_077026_010 Hb_000847_080--Hb_077026_010 Hb_000254_100 Hb_000254_100 Hb_000847_080--Hb_000254_100 Hb_138435_010 Hb_138435_010 Hb_000847_080--Hb_138435_010 Hb_002326_110 Hb_002326_110 Hb_000847_080--Hb_002326_110 Hb_001153_210 Hb_001153_210 Hb_000847_080--Hb_001153_210 Hb_003186_020 Hb_003186_020 Hb_000847_080--Hb_003186_020 Hb_000864_030 Hb_000864_030 Hb_000563_420--Hb_000864_030 Hb_004800_180 Hb_004800_180 Hb_000563_420--Hb_004800_180 Hb_055235_020 Hb_055235_020 Hb_000563_420--Hb_055235_020 Hb_000115_280 Hb_000115_280 Hb_000563_420--Hb_000115_280 Hb_000318_120 Hb_000318_120 Hb_000563_420--Hb_000318_120 Hb_007044_110 Hb_007044_110 Hb_000563_420--Hb_007044_110 Hb_002067_030 Hb_002067_030 Hb_000098_140--Hb_002067_030 Hb_002615_120 Hb_002615_120 Hb_000098_140--Hb_002615_120 Hb_001636_050 Hb_001636_050 Hb_000098_140--Hb_001636_050 Hb_000098_140--Hb_032202_080 Hb_000457_230 Hb_000457_230 Hb_000098_140--Hb_000457_230 Hb_000023_320 Hb_000023_320 Hb_000098_140--Hb_000023_320 Hb_005975_010 Hb_005975_010 Hb_000002_120--Hb_005975_010 Hb_003579_050 Hb_003579_050 Hb_000002_120--Hb_003579_050 Hb_000371_010 Hb_000371_010 Hb_000002_120--Hb_000371_010 Hb_001662_040 Hb_001662_040 Hb_000002_120--Hb_001662_040 Hb_000002_120--Hb_000098_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.74018 4.33042 11.2825 3.90774 9.31256 5.84912
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.58868 3.35417 2.11826 6.27155 6.41085

CAGE analysis