Hb_034271_030

Information

Type -
Description -
Location Contig34271: 9159-11731
Sequence    

Annotation

kegg
ID pop:POPTR_0015s02060g
description POPTRDRAFT_807852; hypothetical protein
nr
ID XP_012089383.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Jatropha curcas]
swissprot
ID Q5G1T1
description Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2 SV=1
trembl
ID A0A067JII0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23574 PE=4 SV=1
Gene Ontology
ID GO:0004672
description pentatricopeptide repeat-containing protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 052_H16.ab1: 10953-11695

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_034271_030 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Jatropha curcas]
2 Hb_012490_040 0.0868300306 - - pre-mRNA cleavage factor im, 25kD subunit, putative [Ricinus communis]
3 Hb_027450_010 0.0890172174 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Populus euphratica]
4 Hb_010436_020 0.0896214455 - - Dicer-like protein 4 [Morus notabilis]
5 Hb_000244_160 0.0912567915 - - PREDICTED: pentatricopeptide repeat-containing protein At3g24000, mitochondrial-like [Jatropha curcas]
6 Hb_001226_020 0.0991709234 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial-like [Jatropha curcas]
7 Hb_000723_260 0.1004010765 - - ethylene insensitive protein, putative [Ricinus communis]
8 Hb_049675_010 0.1008718685 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
9 Hb_001019_060 0.10442635 - - PREDICTED: eukaryotic peptide chain release factor subunit 1-3 [Jatropha curcas]
10 Hb_001623_510 0.1064738825 - - transporter, putative [Ricinus communis]
11 Hb_189118_010 0.1117105285 - - PREDICTED: extended synaptotagmin-1 [Cucumis melo]
12 Hb_000538_200 0.1118600922 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22070-like [Jatropha curcas]
13 Hb_002890_340 0.1130869111 - - PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]
14 Hb_007426_030 0.1132655355 - - PREDICTED: pentatricopeptide repeat-containing protein At2g34400 [Jatropha curcas]
15 Hb_000386_030 0.1152101717 - - PREDICTED: uncharacterized protein LOC105629270 [Jatropha curcas]
16 Hb_010710_010 0.1164036937 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
17 Hb_000577_010 0.1178726359 - - hypothetical protein JCGZ_23887 [Jatropha curcas]
18 Hb_000122_130 0.1190910242 - - conserved hypothetical protein [Ricinus communis]
19 Hb_015306_020 0.1209776806 transcription factor TF Family: MYB-related PREDICTED: dnaJ homolog subfamily C member 2 [Jatropha curcas]
20 Hb_001258_040 0.1210603745 - - hypothetical protein JCGZ_12578 [Jatropha curcas]

Gene co-expression network

sample Hb_034271_030 Hb_034271_030 Hb_012490_040 Hb_012490_040 Hb_034271_030--Hb_012490_040 Hb_027450_010 Hb_027450_010 Hb_034271_030--Hb_027450_010 Hb_010436_020 Hb_010436_020 Hb_034271_030--Hb_010436_020 Hb_000244_160 Hb_000244_160 Hb_034271_030--Hb_000244_160 Hb_001226_020 Hb_001226_020 Hb_034271_030--Hb_001226_020 Hb_000723_260 Hb_000723_260 Hb_034271_030--Hb_000723_260 Hb_000914_070 Hb_000914_070 Hb_012490_040--Hb_000914_070 Hb_000122_130 Hb_000122_130 Hb_012490_040--Hb_000122_130 Hb_003195_060 Hb_003195_060 Hb_012490_040--Hb_003195_060 Hb_049675_010 Hb_049675_010 Hb_012490_040--Hb_049675_010 Hb_002890_340 Hb_002890_340 Hb_012490_040--Hb_002890_340 Hb_027450_010--Hb_000244_160 Hb_001019_060 Hb_001019_060 Hb_027450_010--Hb_001019_060 Hb_000538_200 Hb_000538_200 Hb_027450_010--Hb_000538_200 Hb_002678_020 Hb_002678_020 Hb_027450_010--Hb_002678_020 Hb_001258_040 Hb_001258_040 Hb_027450_010--Hb_001258_040 Hb_010436_020--Hb_049675_010 Hb_010436_020--Hb_000122_130 Hb_010436_030 Hb_010436_030 Hb_010436_020--Hb_010436_030 Hb_010436_020--Hb_001019_060 Hb_010436_020--Hb_012490_040 Hb_000244_160--Hb_000723_260 Hb_010417_050 Hb_010417_050 Hb_000244_160--Hb_010417_050 Hb_000577_010 Hb_000577_010 Hb_000244_160--Hb_000577_010 Hb_000707_050 Hb_000707_050 Hb_000244_160--Hb_000707_050 Hb_001266_060 Hb_001266_060 Hb_001226_020--Hb_001266_060 Hb_003750_080 Hb_003750_080 Hb_001226_020--Hb_003750_080 Hb_000427_050 Hb_000427_050 Hb_001226_020--Hb_000427_050 Hb_003687_100 Hb_003687_100 Hb_001226_020--Hb_003687_100 Hb_004452_010 Hb_004452_010 Hb_001226_020--Hb_004452_010 Hb_000152_820 Hb_000152_820 Hb_000723_260--Hb_000152_820 Hb_000723_260--Hb_000538_200 Hb_002150_030 Hb_002150_030 Hb_000723_260--Hb_002150_030 Hb_000317_020 Hb_000317_020 Hb_000723_260--Hb_000317_020 Hb_007586_030 Hb_007586_030 Hb_000723_260--Hb_007586_030 Hb_007757_110 Hb_007757_110 Hb_000723_260--Hb_007757_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.65688 1.98025 0.357812 1.23058 4.41232 7.33919
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.84329 3.35605 6.73839 2.64339 2.49486

CAGE analysis