Hb_034299_050

Information

Type -
Description -
Location Contig34299: 35107-40192
Sequence    

Annotation

kegg
ID cit:102615522
description uncharacterized LOC102615522
nr
ID XP_006438501.1
description hypothetical protein CICLE_v10031248mg [Citrus clementina]
swissprot
ID -
description -
trembl
ID V4TPI6
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10031248mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35810: 35030-35655
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_034299_050 0.0 - - hypothetical protein CICLE_v10031248mg [Citrus clementina]
2 Hb_004994_100 0.0770368486 - - acyl-CoA thioesterase, putative [Ricinus communis]
3 Hb_000331_080 0.0810076908 - - PREDICTED: UPF0235 protein At5g63440 isoform X1 [Gossypium raimondii]
4 Hb_021596_090 0.084054554 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B [Jatropha curcas]
5 Hb_008878_030 0.0845656656 - - PREDICTED: uncharacterized protein At1g10890-like [Musa acuminata subsp. malaccensis]
6 Hb_000201_120 0.0881012948 - - ubiquitin-protein ligase 2a [Hevea brasiliensis]
7 Hb_000270_370 0.0885554751 - - Uncharacterized protein TCM_011954 [Theobroma cacao]
8 Hb_000671_090 0.0887206303 - - PREDICTED: melanoma-associated antigen 1 [Jatropha curcas]
9 Hb_000373_120 0.0898980081 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105629120 [Jatropha curcas]
10 Hb_001140_060 0.0916479829 - - PREDICTED: ADP-ribosylation factor-related protein 1 [Prunus mume]
11 Hb_004586_320 0.092860522 - - PREDICTED: bet1-like protein At4g14600 [Jatropha curcas]
12 Hb_000221_160 0.0933306613 - - PREDICTED: cytochrome c oxidase subunit 6b-1 [Jatropha curcas]
13 Hb_004837_140 0.0939358113 - - hypothetical protein PRUPE_ppa012469mg [Prunus persica]
14 Hb_012053_070 0.0955048617 - - PREDICTED: uncharacterized protein LOC105637344 [Jatropha curcas]
15 Hb_007479_020 0.096997101 - - PREDICTED: CMP-sialic acid transporter 5 [Jatropha curcas]
16 Hb_000574_480 0.0971106932 - - PREDICTED: uncharacterized protein LOC105634837 [Jatropha curcas]
17 Hb_012675_060 0.0974059348 - - hypothetical protein PRUPE_ppa007715mg [Prunus persica]
18 Hb_002686_020 0.098346854 - - galactose-1-phosphate uridylyltransferase, putative [Ricinus communis]
19 Hb_000020_060 0.0985665461 - - PREDICTED: trafficking protein particle complex subunit 4 [Jatropha curcas]
20 Hb_156947_010 0.0988132849 - - kinase-like protein pac.x.7.4, partial [Platanus x acerifolia]

Gene co-expression network

sample Hb_034299_050 Hb_034299_050 Hb_004994_100 Hb_004994_100 Hb_034299_050--Hb_004994_100 Hb_000331_080 Hb_000331_080 Hb_034299_050--Hb_000331_080 Hb_021596_090 Hb_021596_090 Hb_034299_050--Hb_021596_090 Hb_008878_030 Hb_008878_030 Hb_034299_050--Hb_008878_030 Hb_000201_120 Hb_000201_120 Hb_034299_050--Hb_000201_120 Hb_000270_370 Hb_000270_370 Hb_034299_050--Hb_000270_370 Hb_004994_100--Hb_000331_080 Hb_153112_020 Hb_153112_020 Hb_004994_100--Hb_153112_020 Hb_002477_070 Hb_002477_070 Hb_004994_100--Hb_002477_070 Hb_001277_330 Hb_001277_330 Hb_004994_100--Hb_001277_330 Hb_026527_030 Hb_026527_030 Hb_004994_100--Hb_026527_030 Hb_000331_080--Hb_153112_020 Hb_000331_080--Hb_008878_030 Hb_000840_030 Hb_000840_030 Hb_000331_080--Hb_000840_030 Hb_002686_020 Hb_002686_020 Hb_000331_080--Hb_002686_020 Hb_012725_050 Hb_012725_050 Hb_000331_080--Hb_012725_050 Hb_000046_100 Hb_000046_100 Hb_021596_090--Hb_000046_100 Hb_007044_120 Hb_007044_120 Hb_021596_090--Hb_007044_120 Hb_143766_010 Hb_143766_010 Hb_021596_090--Hb_143766_010 Hb_000103_320 Hb_000103_320 Hb_021596_090--Hb_000103_320 Hb_000638_250 Hb_000638_250 Hb_021596_090--Hb_000638_250 Hb_003050_080 Hb_003050_080 Hb_008878_030--Hb_003050_080 Hb_008878_030--Hb_002686_020 Hb_000832_140 Hb_000832_140 Hb_008878_030--Hb_000832_140 Hb_004048_110 Hb_004048_110 Hb_008878_030--Hb_004048_110 Hb_004837_140 Hb_004837_140 Hb_008878_030--Hb_004837_140 Hb_003581_150 Hb_003581_150 Hb_000201_120--Hb_003581_150 Hb_002830_020 Hb_002830_020 Hb_000201_120--Hb_002830_020 Hb_001016_030 Hb_001016_030 Hb_000201_120--Hb_001016_030 Hb_001616_040 Hb_001616_040 Hb_000201_120--Hb_001616_040 Hb_000201_120--Hb_000840_030 Hb_000574_480 Hb_000574_480 Hb_000201_120--Hb_000574_480 Hb_027073_040 Hb_027073_040 Hb_000270_370--Hb_027073_040 Hb_000221_160 Hb_000221_160 Hb_000270_370--Hb_000221_160 Hb_000373_120 Hb_000373_120 Hb_000270_370--Hb_000373_120 Hb_000979_230 Hb_000979_230 Hb_000270_370--Hb_000979_230 Hb_000671_090 Hb_000671_090 Hb_000270_370--Hb_000671_090 Hb_033834_040 Hb_033834_040 Hb_000270_370--Hb_033834_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.82711 1.48207 3.29959 4.49664 6.64809 3.76181
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.1817 12.4852 8.93334 4.79909 2.74972

CAGE analysis