Hb_034299_060

Information

Type transcription factor
Description TF Family: Orphans
Location Contig34299: 44380-45801
Sequence    

Annotation

kegg
ID rcu:RCOM_0699760
description two-component sensor protein histidine protein kinase, putative
nr
ID XP_012092019.1
description PREDICTED: two-component response regulator ARR5 [Jatropha curcas]
swissprot
ID Q9ZWS9
description Two-component response regulator ARR3 OS=Arabidopsis thaliana GN=ARR3 PE=2 SV=1
trembl
ID A0A067JP36
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21755 PE=4 SV=1
Gene Ontology
ID GO:0005622
description two-component response regulator arr5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35812: 44444-45654 , PASA_asmbl_35813: 44495-45787
cDNA
(Sanger)
(ID:Location)		 024_O12.ab1: 44521-45671 , 045_E09.ab1: 44495-45783 , 048_F11.ab1: 44495-45787

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_034299_060 0.0 transcription factor TF Family: Orphans PREDICTED: two-component response regulator ARR5 [Jatropha curcas]
2 Hb_000429_170 0.0829834794 - - PREDICTED: adenylosuccinate synthetase 2, chloroplastic [Jatropha curcas]
3 Hb_054127_040 0.0860821348 - - PREDICTED: 2-hydroxyacyl-CoA lyase [Jatropha curcas]
4 Hb_003151_050 0.0963870315 desease resistance Gene Name: MMR_HSR1 PREDICTED: uncharacterized protein LOC105639402 isoform X1 [Jatropha curcas]
5 Hb_006824_020 0.0984052371 - - PREDICTED: thioredoxin domain-containing protein 9 homolog [Jatropha curcas]
6 Hb_000622_040 0.0995286364 - - PREDICTED: uncharacterized protein LOC104596457 isoform X1 [Nelumbo nucifera]
7 Hb_005357_150 0.101688212 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_004108_050 0.103482071 - - PREDICTED: elongation factor Tu, mitochondrial [Jatropha curcas]
9 Hb_007924_020 0.1052531296 - - PREDICTED: chaperonin CPN60-like 2, mitochondrial isoform X2 [Jatropha curcas]
10 Hb_000676_220 0.110377577 - - ADP-ribosylation factor, putative [Ricinus communis]
11 Hb_006775_080 0.1104258789 - - PREDICTED: uncharacterized protein LOC105649730 [Jatropha curcas]
12 Hb_000056_340 0.1129385691 - - 60S ribosomal protein L34A [Hevea brasiliensis]
13 Hb_004226_020 0.1135390494 - - -
14 Hb_000412_110 0.1136219906 - - Rop4 [Hevea brasiliensis]
15 Hb_023386_080 0.1136379019 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
16 Hb_000922_270 0.1144760886 - - iron-sulfur cluster scaffold protein [Hevea brasiliensis]
17 Hb_000634_100 0.1160242098 - - hypothetical protein PRUPE_ppa013350mg [Prunus persica]
18 Hb_176681_010 0.1160917525 - - PREDICTED: probable RNA helicase SDE3 [Populus euphratica]
19 Hb_044662_070 0.1173505155 - - PREDICTED: hsp70-Hsp90 organizing protein 3 [Jatropha curcas]
20 Hb_000436_050 0.1199700164 - - PREDICTED: INO80 complex subunit C [Jatropha curcas]

Gene co-expression network

sample Hb_034299_060 Hb_034299_060 Hb_000429_170 Hb_000429_170 Hb_034299_060--Hb_000429_170 Hb_054127_040 Hb_054127_040 Hb_034299_060--Hb_054127_040 Hb_003151_050 Hb_003151_050 Hb_034299_060--Hb_003151_050 Hb_006824_020 Hb_006824_020 Hb_034299_060--Hb_006824_020 Hb_000622_040 Hb_000622_040 Hb_034299_060--Hb_000622_040 Hb_005357_150 Hb_005357_150 Hb_034299_060--Hb_005357_150 Hb_002253_070 Hb_002253_070 Hb_000429_170--Hb_002253_070 Hb_007924_020 Hb_007924_020 Hb_000429_170--Hb_007924_020 Hb_000429_170--Hb_000622_040 Hb_000429_170--Hb_003151_050 Hb_000834_270 Hb_000834_270 Hb_000429_170--Hb_000834_270 Hb_010172_070 Hb_010172_070 Hb_054127_040--Hb_010172_070 Hb_054127_040--Hb_000429_170 Hb_001257_080 Hb_001257_080 Hb_054127_040--Hb_001257_080 Hb_000056_340 Hb_000056_340 Hb_054127_040--Hb_000056_340 Hb_044662_070 Hb_044662_070 Hb_054127_040--Hb_044662_070 Hb_000091_090 Hb_000091_090 Hb_003151_050--Hb_000091_090 Hb_023386_080 Hb_023386_080 Hb_003151_050--Hb_023386_080 Hb_021650_030 Hb_021650_030 Hb_003151_050--Hb_021650_030 Hb_004108_050 Hb_004108_050 Hb_003151_050--Hb_004108_050 Hb_000665_040 Hb_000665_040 Hb_003151_050--Hb_000665_040 Hb_006775_080 Hb_006775_080 Hb_006824_020--Hb_006775_080 Hb_001767_100 Hb_001767_100 Hb_006824_020--Hb_001767_100 Hb_000732_260 Hb_000732_260 Hb_006824_020--Hb_000732_260 Hb_021068_050 Hb_021068_050 Hb_006824_020--Hb_021068_050 Hb_000676_220 Hb_000676_220 Hb_006824_020--Hb_000676_220 Hb_006569_020 Hb_006569_020 Hb_006824_020--Hb_006569_020 Hb_000622_040--Hb_007924_020 Hb_000922_270 Hb_000922_270 Hb_000622_040--Hb_000922_270 Hb_009404_020 Hb_009404_020 Hb_000622_040--Hb_009404_020 Hb_005000_070 Hb_005000_070 Hb_000622_040--Hb_005000_070 Hb_001981_090 Hb_001981_090 Hb_005357_150--Hb_001981_090 Hb_005357_150--Hb_004108_050 Hb_003057_120 Hb_003057_120 Hb_005357_150--Hb_003057_120 Hb_005357_150--Hb_003151_050 Hb_003408_030 Hb_003408_030 Hb_005357_150--Hb_003408_030 Hb_004800_160 Hb_004800_160 Hb_005357_150--Hb_004800_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
57.8466 15.1645 11.356 9.12404 53.8165 20.7636
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
74.3545 51.7397 63.5403 20.9694 8.39262

CAGE analysis