Hb_034310_020

Information

Type -
Description -
Location Contig34310: 28997-31887
Sequence    

Annotation

kegg
ID rcu:RCOM_0851230
description serine-threonine protein kinase, plant-type, putative
nr
ID XP_012083411.1
description PREDICTED: proline-rich receptor-like protein kinase PERK3 [Jatropha curcas]
swissprot
ID Q8LEB6
description Probable receptor-like protein kinase At5g18500 OS=Arabidopsis thaliana GN=At5g18500 PE=2 SV=1
trembl
ID B9RUB2
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_0851230 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable lrr receptor-like serine threonine-protein kinase at2g28960

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_034310_020 0.0 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 [Jatropha curcas]
2 Hb_033772_040 0.0507275468 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004474_020 0.0898999852 - - aldo-keto reductase, putative [Ricinus communis]
4 Hb_004899_380 0.0969633171 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004319_100 0.1010108189 - - PREDICTED: gibberellin-regulated protein 14 isoform X3 [Jatropha curcas]
6 Hb_008406_050 0.1107966058 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 2 [Jatropha curcas]
7 Hb_048987_020 0.1120322149 - - hypothetical protein JCGZ_27055 [Jatropha curcas]
8 Hb_000224_020 0.1147310802 - - PREDICTED: uncharacterized protein LOC105640888 [Jatropha curcas]
9 Hb_000224_050 0.1303931599 - - conserved hypothetical protein [Ricinus communis]
10 Hb_007426_100 0.1339074061 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002894_020 0.1351952504 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
12 Hb_002641_090 0.1378699227 - - PREDICTED: uncharacterized protein LOC105643559 [Jatropha curcas]
13 Hb_180695_010 0.1469483411 - - hypothetical protein CICLE_v10013449mg [Citrus clementina]
14 Hb_010926_020 0.1485820729 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Camelina sativa]
15 Hb_008066_020 0.1488847386 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002304_110 0.151155186 - - hypothetical protein MIMGU_mgv1a023246mg [Erythranthe guttata]
17 Hb_001529_010 0.1536960979 - - -
18 Hb_000194_030 0.1557995802 transcription factor TF Family: NAC NAC transcription factor 059 [Jatropha curcas]
19 Hb_003216_010 0.1566699626 - - glycosyl hydrolase family protein [Populus trichocarpa]
20 Hb_007292_020 0.1567834609 - - Indole-3-acetic acid-amido synthetase GH3.6, putative [Ricinus communis]

Gene co-expression network

sample Hb_034310_020 Hb_034310_020 Hb_033772_040 Hb_033772_040 Hb_034310_020--Hb_033772_040 Hb_004474_020 Hb_004474_020 Hb_034310_020--Hb_004474_020 Hb_004899_380 Hb_004899_380 Hb_034310_020--Hb_004899_380 Hb_004319_100 Hb_004319_100 Hb_034310_020--Hb_004319_100 Hb_008406_050 Hb_008406_050 Hb_034310_020--Hb_008406_050 Hb_048987_020 Hb_048987_020 Hb_034310_020--Hb_048987_020 Hb_033772_040--Hb_004319_100 Hb_033772_040--Hb_004474_020 Hb_001529_010 Hb_001529_010 Hb_033772_040--Hb_001529_010 Hb_010926_020 Hb_010926_020 Hb_033772_040--Hb_010926_020 Hb_033772_040--Hb_004899_380 Hb_004474_020--Hb_004899_380 Hb_000224_020 Hb_000224_020 Hb_004474_020--Hb_000224_020 Hb_004474_020--Hb_048987_020 Hb_003777_150 Hb_003777_150 Hb_004474_020--Hb_003777_150 Hb_004474_020--Hb_008406_050 Hb_004899_380--Hb_048987_020 Hb_004899_380--Hb_000224_020 Hb_001006_080 Hb_001006_080 Hb_004899_380--Hb_001006_080 Hb_000696_120 Hb_000696_120 Hb_004899_380--Hb_000696_120 Hb_000194_030 Hb_000194_030 Hb_004319_100--Hb_000194_030 Hb_007426_100 Hb_007426_100 Hb_004319_100--Hb_007426_100 Hb_004319_100--Hb_001529_010 Hb_159012_010 Hb_159012_010 Hb_004319_100--Hb_159012_010 Hb_008406_050--Hb_004899_380 Hb_008406_050--Hb_048987_020 Hb_008406_050--Hb_033772_040 Hb_008406_050--Hb_000224_020 Hb_087314_010 Hb_087314_010 Hb_048987_020--Hb_087314_010 Hb_003878_130 Hb_003878_130 Hb_048987_020--Hb_003878_130 Hb_180695_010 Hb_180695_010 Hb_048987_020--Hb_180695_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00948764 0.0255881 0.127561 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00818632 0

CAGE analysis