Hb_034337_010

Information

Type -
Description -
Location Contig34337: 5299-6356
Sequence    

Annotation

kegg
ID rcu:RCOM_1610520
description vesicle-associated membrane protein, putative
nr
ID XP_002511657.1
description vesicle-associated membrane protein, putative [Ricinus communis]
swissprot
ID Q8VZ95
description Vesicle-associated protein 1-1 OS=Arabidopsis thaliana GN=PVA11 PE=1 SV=1
trembl
ID B9RD68
description Vesicle-associated membrane protein, putative OS=Ricinus communis GN=RCOM_1610520 PE=4 SV=1
Gene Ontology
ID GO:0005789
description vesicle-associated protein 1-2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_034337_010 0.0 - - vesicle-associated membrane protein, putative [Ricinus communis]
2 Hb_001544_080 0.1826896649 - - PREDICTED: 66 kDa stress protein-like [Jatropha curcas]
3 Hb_029977_050 0.1870396283 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA2 isoform X1 [Jatropha curcas]
4 Hb_000413_230 0.1908973613 - - thioredoxin h [Hevea brasiliensis]
5 Hb_101089_010 0.2239330286 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
6 Hb_165130_010 0.2256574445 - - PREDICTED: uncharacterized protein LOC105648304 [Jatropha curcas]
7 Hb_011716_110 0.226173716 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]
8 Hb_001351_040 0.2309366509 - - PREDICTED: branched-chain-amino-acid aminotransferase 2, chloroplastic-like [Jatropha curcas]
9 Hb_117895_010 0.2360702781 - - hypothetical protein JCGZ_17178 [Jatropha curcas]
10 Hb_133127_010 0.2379312086 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
11 Hb_011382_050 0.2436687826 - - hypothetical protein PRUPE_ppa025935mg [Prunus persica]
12 Hb_000083_130 0.2453458119 - - hypothetical protein RCOM_0884570 [Ricinus communis]
13 Hb_011310_200 0.2454498385 - - grr1, plant, putative [Ricinus communis]
14 Hb_000589_130 0.2495060671 desease resistance Gene Name: NB-ARC unnamed protein product [Vitis vinifera]
15 Hb_000022_180 0.2514631249 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [Jatropha curcas]
16 Hb_003384_070 0.2514920639 - - PREDICTED: methylesterase 17-like [Populus euphratica]
17 Hb_001278_040 0.2534903467 - - PREDICTED: lipid phosphate phosphatase 1-like isoform X1 [Jatropha curcas]
18 Hb_005841_080 0.2540566111 - - hypothetical protein POPTR_0018s11370g [Populus trichocarpa]
19 Hb_000108_170 0.2541970152 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like [Jatropha curcas]
20 Hb_001625_010 0.2549305215 - - PREDICTED: glyoxylate/hydroxypyruvate reductase HPR3-like [Jatropha curcas]

Gene co-expression network

sample Hb_034337_010 Hb_034337_010 Hb_001544_080 Hb_001544_080 Hb_034337_010--Hb_001544_080 Hb_029977_050 Hb_029977_050 Hb_034337_010--Hb_029977_050 Hb_000413_230 Hb_000413_230 Hb_034337_010--Hb_000413_230 Hb_101089_010 Hb_101089_010 Hb_034337_010--Hb_101089_010 Hb_165130_010 Hb_165130_010 Hb_034337_010--Hb_165130_010 Hb_011716_110 Hb_011716_110 Hb_034337_010--Hb_011716_110 Hb_117895_010 Hb_117895_010 Hb_001544_080--Hb_117895_010 Hb_001544_080--Hb_011716_110 Hb_011310_200 Hb_011310_200 Hb_001544_080--Hb_011310_200 Hb_000866_370 Hb_000866_370 Hb_001544_080--Hb_000866_370 Hb_009897_010 Hb_009897_010 Hb_001544_080--Hb_009897_010 Hb_001544_080--Hb_029977_050 Hb_001278_040 Hb_001278_040 Hb_029977_050--Hb_001278_040 Hb_080451_010 Hb_080451_010 Hb_029977_050--Hb_080451_010 Hb_000120_970 Hb_000120_970 Hb_029977_050--Hb_000120_970 Hb_003371_230 Hb_003371_230 Hb_029977_050--Hb_003371_230 Hb_000787_190 Hb_000787_190 Hb_029977_050--Hb_000787_190 Hb_000083_130 Hb_000083_130 Hb_000413_230--Hb_000083_130 Hb_003972_040 Hb_003972_040 Hb_000413_230--Hb_003972_040 Hb_000152_460 Hb_000152_460 Hb_000413_230--Hb_000152_460 Hb_001900_060 Hb_001900_060 Hb_000413_230--Hb_001900_060 Hb_002928_120 Hb_002928_120 Hb_000413_230--Hb_002928_120 Hb_011382_050 Hb_011382_050 Hb_101089_010--Hb_011382_050 Hb_003384_070 Hb_003384_070 Hb_101089_010--Hb_003384_070 Hb_000844_010 Hb_000844_010 Hb_101089_010--Hb_000844_010 Hb_164010_090 Hb_164010_090 Hb_101089_010--Hb_164010_090 Hb_085327_010 Hb_085327_010 Hb_101089_010--Hb_085327_010 Hb_004341_010 Hb_004341_010 Hb_101089_010--Hb_004341_010 Hb_000189_120 Hb_000189_120 Hb_165130_010--Hb_000189_120 Hb_003576_050 Hb_003576_050 Hb_165130_010--Hb_003576_050 Hb_002660_100 Hb_002660_100 Hb_165130_010--Hb_002660_100 Hb_002928_180 Hb_002928_180 Hb_165130_010--Hb_002928_180 Hb_165130_010--Hb_002928_120 Hb_165130_010--Hb_011310_200 Hb_004162_120 Hb_004162_120 Hb_011716_110--Hb_004162_120 Hb_065500_030 Hb_065500_030 Hb_011716_110--Hb_065500_030 Hb_011716_110--Hb_009897_010 Hb_000599_130 Hb_000599_130 Hb_011716_110--Hb_000599_130 Hb_011716_110--Hb_080451_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.916254 5.33444 0 3.10273 0.584184 1.94079
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.106522 0 1.0193 4.64473 0.322093

CAGE analysis