Hb_034350_010

Information

Type -
Description -
Location Contig34350: 5328-11136
Sequence    

Annotation

kegg
ID pop:POPTR_0019s09630g
description hypothetical protein
nr
ID XP_011004904.1
description PREDICTED: TMV resistance protein N-like isoform X2 [Populus euphratica]
swissprot
ID Q9SCX7
description Inactive disease resistance protein RPS4 OS=Arabidopsis thaliana GN=RPS4 PE=3 SV=1
trembl
ID B9INP3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s09630g PE=4 SV=2
Gene Ontology
ID GO:0005515
description protein suppressor of npr1- constitutive 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35888: 6852-7357 , PASA_asmbl_35889: 9110-9510 , PASA_asmbl_35890: 9585-9702 , PASA_asmbl_35893: 10419-11208
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_034350_010 0.0 - - PREDICTED: TMV resistance protein N-like isoform X2 [Populus euphratica]
2 Hb_004657_020 0.088035152 - - rer1 protein, putative [Ricinus communis]
3 Hb_004242_080 0.1020822199 - - PREDICTED: uncharacterized protein LOC105632857 [Jatropha curcas]
4 Hb_014720_080 0.1034529001 - - iron-sulfur cluster scaffold protein [Hevea brasiliensis]
5 Hb_000300_640 0.109098316 - - PREDICTED: uncharacterized protein LOC100855285 [Vitis vinifera]
6 Hb_002685_020 0.1106913952 - - -
7 Hb_011310_190 0.1107755972 - - PREDICTED: uncharacterized protein LOC105637641 isoform X1 [Jatropha curcas]
8 Hb_003050_230 0.1119855222 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000987_120 0.1134235348 - - PREDICTED: protein SIEL [Jatropha curcas]
10 Hb_002411_200 0.1144097753 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003020_230 0.1148020471 - - DNA-directed RNA polymerase II subunit RPB7 [Glycine max]
12 Hb_003052_100 0.1155762072 - - ubiquitin-protein ligase, putative [Ricinus communis]
13 Hb_000025_120 0.1160614692 - - PREDICTED: uncharacterized protein LOC105628946 isoform X1 [Jatropha curcas]
14 Hb_011828_020 0.1170705608 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-10-like isoform X2 [Jatropha curcas]
15 Hb_003893_090 0.1175132012 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
16 Hb_000625_070 0.1187410243 transcription factor TF Family: CSD PREDICTED: cold shock domain-containing protein 3 [Jatropha curcas]
17 Hb_000522_080 0.1193330596 - - PREDICTED: uncharacterized protein LOC105632108 [Jatropha curcas]
18 Hb_005398_030 0.1208924934 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase 1-like [Jatropha curcas]
19 Hb_000086_570 0.1213003954 - - hypothetical protein JCGZ_24934 [Jatropha curcas]
20 Hb_001221_410 0.1225086826 - - PREDICTED: gamma carbonic anhydrase-like 2, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_034350_010 Hb_034350_010 Hb_004657_020 Hb_004657_020 Hb_034350_010--Hb_004657_020 Hb_004242_080 Hb_004242_080 Hb_034350_010--Hb_004242_080 Hb_014720_080 Hb_014720_080 Hb_034350_010--Hb_014720_080 Hb_000300_640 Hb_000300_640 Hb_034350_010--Hb_000300_640 Hb_002685_020 Hb_002685_020 Hb_034350_010--Hb_002685_020 Hb_011310_190 Hb_011310_190 Hb_034350_010--Hb_011310_190 Hb_003052_100 Hb_003052_100 Hb_004657_020--Hb_003052_100 Hb_002078_450 Hb_002078_450 Hb_004657_020--Hb_002078_450 Hb_000371_080 Hb_000371_080 Hb_004657_020--Hb_000371_080 Hb_009711_030 Hb_009711_030 Hb_004657_020--Hb_009711_030 Hb_001195_690 Hb_001195_690 Hb_004657_020--Hb_001195_690 Hb_005686_110 Hb_005686_110 Hb_004657_020--Hb_005686_110 Hb_000522_080 Hb_000522_080 Hb_004242_080--Hb_000522_080 Hb_000163_200 Hb_000163_200 Hb_004242_080--Hb_000163_200 Hb_001221_410 Hb_001221_410 Hb_004242_080--Hb_001221_410 Hb_000987_120 Hb_000987_120 Hb_004242_080--Hb_000987_120 Hb_070986_010 Hb_070986_010 Hb_004242_080--Hb_070986_010 Hb_001722_100 Hb_001722_100 Hb_014720_080--Hb_001722_100 Hb_000025_120 Hb_000025_120 Hb_014720_080--Hb_000025_120 Hb_021650_030 Hb_021650_030 Hb_014720_080--Hb_021650_030 Hb_002540_030 Hb_002540_030 Hb_014720_080--Hb_002540_030 Hb_000146_020 Hb_000146_020 Hb_014720_080--Hb_000146_020 Hb_000834_270 Hb_000834_270 Hb_014720_080--Hb_000834_270 Hb_000062_550 Hb_000062_550 Hb_000300_640--Hb_000062_550 Hb_001366_190 Hb_001366_190 Hb_000300_640--Hb_001366_190 Hb_000802_080 Hb_000802_080 Hb_000300_640--Hb_000802_080 Hb_000300_640--Hb_002685_020 Hb_000705_210 Hb_000705_210 Hb_000300_640--Hb_000705_210 Hb_000700_110 Hb_000700_110 Hb_000300_640--Hb_000700_110 Hb_026527_030 Hb_026527_030 Hb_002685_020--Hb_026527_030 Hb_002216_040 Hb_002216_040 Hb_002685_020--Hb_002216_040 Hb_019253_020 Hb_019253_020 Hb_002685_020--Hb_019253_020 Hb_004678_050 Hb_004678_050 Hb_002685_020--Hb_004678_050 Hb_000116_440 Hb_000116_440 Hb_002685_020--Hb_000116_440 Hb_007254_040 Hb_007254_040 Hb_011310_190--Hb_007254_040 Hb_032717_080 Hb_032717_080 Hb_011310_190--Hb_032717_080 Hb_005398_030 Hb_005398_030 Hb_011310_190--Hb_005398_030 Hb_007317_180 Hb_007317_180 Hb_011310_190--Hb_007317_180 Hb_011310_190--Hb_001221_410 Hb_000103_090 Hb_000103_090 Hb_011310_190--Hb_000103_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.76296 3.99709 0.397898 4.43581 5.513 7.47777
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.8885 11.5321 6.5584 4.21858 2.0018

CAGE analysis