Hb_034380_020

Information

Type -
Description -
Location Contig34380: 17535-26348
Sequence    

Annotation

kegg
ID pda:103720318
description phosphoglycerate mutase-like
nr
ID XP_012093148.1
description PREDICTED: phosphoglycerate mutase-like [Jatropha curcas]
swissprot
ID Q6MEW4
description 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Protochlamydia amoebophila (strain UWE25) GN=gpmA PE=3 SV=1
trembl
ID A0A067LHM7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24077 PE=3 SV=1
Gene Ontology
ID GO:0004619
description phosphoglycerate mutase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35918: 17669-18712 , PASA_asmbl_35919: 19211-22770 , PASA_asmbl_35920: 25985-26325
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_034380_020 0.0 - - PREDICTED: phosphoglycerate mutase-like [Jatropha curcas]
2 Hb_005551_040 0.0628839447 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7 [Jatropha curcas]
3 Hb_004889_010 0.0698317818 - - Vacuolar protein sorting-associated protein-like protein [Medicago truncatula]
4 Hb_001489_080 0.0734838803 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
5 Hb_002014_020 0.0798514439 - - PREDICTED: protein Mpv17 isoform X2 [Jatropha curcas]
6 Hb_007416_060 0.0827534813 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 18 [Jatropha curcas]
7 Hb_003697_040 0.0839379424 - - hypothetical protein B456_005G209600 [Gossypium raimondii]
8 Hb_000982_080 0.0898103388 desease resistance Gene Name: AAA PREDICTED: 26S proteasome regulatory subunit 4 homolog A [Jatropha curcas]
9 Hb_005488_200 0.090038958 - - PREDICTED: uncharacterized protein LOC105632499 isoform X1 [Jatropha curcas]
10 Hb_000676_150 0.0909789342 - - 50S ribosomal protein L7/L12, putative [Ricinus communis]
11 Hb_000436_130 0.0911304082 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
12 Hb_008232_010 0.0915513528 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
13 Hb_001390_130 0.0934166128 - - hypothetical protein POPTR_0009s08590g [Populus trichocarpa]
14 Hb_000538_070 0.0934699599 - - PREDICTED: coatomer subunit delta [Jatropha curcas]
15 Hb_008841_020 0.0935781468 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631075 isoform X1 [Jatropha curcas]
16 Hb_000291_080 0.0940826759 - - Vacuolar protein sorting-associated protein VPS9, putative [Ricinus communis]
17 Hb_003053_020 0.0945951096 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
18 Hb_000783_020 0.0953714651 - - PREDICTED: glycerol-3-phosphate dehydrogenase SDP6, mitochondrial [Jatropha curcas]
19 Hb_005183_120 0.0970969688 - - protein translocase, putative [Ricinus communis]
20 Hb_000985_030 0.0972488209 - - PREDICTED: RRP15-like protein [Populus euphratica]

Gene co-expression network

sample Hb_034380_020 Hb_034380_020 Hb_005551_040 Hb_005551_040 Hb_034380_020--Hb_005551_040 Hb_004889_010 Hb_004889_010 Hb_034380_020--Hb_004889_010 Hb_001489_080 Hb_001489_080 Hb_034380_020--Hb_001489_080 Hb_002014_020 Hb_002014_020 Hb_034380_020--Hb_002014_020 Hb_007416_060 Hb_007416_060 Hb_034380_020--Hb_007416_060 Hb_003697_040 Hb_003697_040 Hb_034380_020--Hb_003697_040 Hb_005551_040--Hb_004889_010 Hb_024650_070 Hb_024650_070 Hb_005551_040--Hb_024650_070 Hb_007676_080 Hb_007676_080 Hb_005551_040--Hb_007676_080 Hb_010361_010 Hb_010361_010 Hb_005551_040--Hb_010361_010 Hb_005551_040--Hb_002014_020 Hb_004889_010--Hb_003697_040 Hb_009615_070 Hb_009615_070 Hb_004889_010--Hb_009615_070 Hb_003349_090 Hb_003349_090 Hb_004889_010--Hb_003349_090 Hb_089032_030 Hb_089032_030 Hb_004889_010--Hb_089032_030 Hb_000985_030 Hb_000985_030 Hb_001489_080--Hb_000985_030 Hb_004934_100 Hb_004934_100 Hb_001489_080--Hb_004934_100 Hb_000783_020 Hb_000783_020 Hb_001489_080--Hb_000783_020 Hb_000599_250 Hb_000599_250 Hb_001489_080--Hb_000599_250 Hb_000003_230 Hb_000003_230 Hb_001489_080--Hb_000003_230 Hb_002169_040 Hb_002169_040 Hb_001489_080--Hb_002169_040 Hb_000236_040 Hb_000236_040 Hb_002014_020--Hb_000236_040 Hb_031862_100 Hb_031862_100 Hb_002014_020--Hb_031862_100 Hb_002014_020--Hb_004889_010 Hb_001218_030 Hb_001218_030 Hb_002014_020--Hb_001218_030 Hb_001828_150 Hb_001828_150 Hb_002014_020--Hb_001828_150 Hb_005488_200 Hb_005488_200 Hb_007416_060--Hb_005488_200 Hb_000116_260 Hb_000116_260 Hb_007416_060--Hb_000116_260 Hb_007416_060--Hb_000783_020 Hb_007416_060--Hb_001489_080 Hb_003376_250 Hb_003376_250 Hb_007416_060--Hb_003376_250 Hb_000436_130 Hb_000436_130 Hb_007416_060--Hb_000436_130 Hb_000477_060 Hb_000477_060 Hb_003697_040--Hb_000477_060 Hb_003605_090 Hb_003605_090 Hb_003697_040--Hb_003605_090 Hb_003053_020 Hb_003053_020 Hb_003697_040--Hb_003053_020 Hb_003697_040--Hb_004934_100 Hb_003697_040--Hb_000783_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.18662 2.04475 5.06101 5.73565 2.61275 6.09224
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.01269 10.2926 10.778 7.5455 6.269

CAGE analysis