Hb_034406_020

Information

Type -
Description -
Location Contig34406: 13837-18614
Sequence    

Annotation

kegg
ID rcu:RCOM_0445940
description pla2g4b, putative
nr
ID XP_012067091.1
description PREDICTED: jmjC domain-containing protein 7 [Jatropha curcas]
swissprot
ID P0C870
description JmjC domain-containing protein 7 OS=Homo sapiens GN=JMJD7 PE=1 SV=1
trembl
ID A0A067LC81
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01888 PE=4 SV=1
Gene Ontology
ID GO:0004623
description jmjc domain-containing protein 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35933: 14735-18275
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_034406_020 0.0 - - PREDICTED: jmjC domain-containing protein 7 [Jatropha curcas]
2 Hb_021409_030 0.0931131331 - - PREDICTED: serine/threonine-protein kinase WNK8 isoform X3 [Jatropha curcas]
3 Hb_000258_170 0.0943981811 - - PREDICTED: uncharacterized protein LOC105630437 [Jatropha curcas]
4 Hb_000072_080 0.0985531281 - - PREDICTED: probable ribosomal protein S11, mitochondrial [Jatropha curcas]
5 Hb_007044_060 0.0986034737 - - ATP binding protein, putative [Ricinus communis]
6 Hb_001287_030 0.0993366694 - - 30S ribosomal protein S31, mitochondrial precursor, putative [Ricinus communis]
7 Hb_019654_090 0.0997977671 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33680 [Jatropha curcas]
8 Hb_000366_090 0.1028560647 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32430, mitochondrial [Jatropha curcas]
9 Hb_000175_060 0.1033201325 - - PREDICTED: uncharacterized protein LOC105634837 [Jatropha curcas]
10 Hb_002056_060 0.1079488411 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
11 Hb_001143_080 0.1087220277 - - PREDICTED: F-box protein 7 [Jatropha curcas]
12 Hb_168319_030 0.1087594264 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
13 Hb_005463_040 0.1094239724 - - signal transducer, putative [Ricinus communis]
14 Hb_007943_090 0.1095055607 - - PREDICTED: probable plastidic glucose transporter 2 [Jatropha curcas]
15 Hb_004375_140 0.1109842098 - - PREDICTED: nicotinamide adenine dinucleotide transporter 1, chloroplastic [Jatropha curcas]
16 Hb_008453_090 0.1113423749 - - hypothetical protein JCGZ_08177 [Jatropha curcas]
17 Hb_000264_090 0.1114575188 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
18 Hb_012753_160 0.1117771988 - - ara4-interacting protein, putative [Ricinus communis]
19 Hb_001923_010 0.1122093231 - - PREDICTED: outer envelope protein 80, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_005463_030 0.1137820645 - - PREDICTED: uncharacterized protein LOC105632512 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_034406_020 Hb_034406_020 Hb_021409_030 Hb_021409_030 Hb_034406_020--Hb_021409_030 Hb_000258_170 Hb_000258_170 Hb_034406_020--Hb_000258_170 Hb_000072_080 Hb_000072_080 Hb_034406_020--Hb_000072_080 Hb_007044_060 Hb_007044_060 Hb_034406_020--Hb_007044_060 Hb_001287_030 Hb_001287_030 Hb_034406_020--Hb_001287_030 Hb_019654_090 Hb_019654_090 Hb_034406_020--Hb_019654_090 Hb_129204_030 Hb_129204_030 Hb_021409_030--Hb_129204_030 Hb_004375_140 Hb_004375_140 Hb_021409_030--Hb_004375_140 Hb_138585_060 Hb_138585_060 Hb_021409_030--Hb_138585_060 Hb_000608_370 Hb_000608_370 Hb_021409_030--Hb_000608_370 Hb_000240_090 Hb_000240_090 Hb_021409_030--Hb_000240_090 Hb_012753_160 Hb_012753_160 Hb_021409_030--Hb_012753_160 Hb_000258_170--Hb_000608_370 Hb_000258_170--Hb_021409_030 Hb_000258_170--Hb_138585_060 Hb_005511_160 Hb_005511_160 Hb_000258_170--Hb_005511_160 Hb_000788_090 Hb_000788_090 Hb_000258_170--Hb_000788_090 Hb_001047_230 Hb_001047_230 Hb_000258_170--Hb_001047_230 Hb_000072_080--Hb_012753_160 Hb_002235_280 Hb_002235_280 Hb_000072_080--Hb_002235_280 Hb_000072_080--Hb_138585_060 Hb_000072_080--Hb_021409_030 Hb_001143_080 Hb_001143_080 Hb_000072_080--Hb_001143_080 Hb_000120_680 Hb_000120_680 Hb_000072_080--Hb_000120_680 Hb_001269_170 Hb_001269_170 Hb_007044_060--Hb_001269_170 Hb_002397_070 Hb_002397_070 Hb_007044_060--Hb_002397_070 Hb_002231_030 Hb_002231_030 Hb_007044_060--Hb_002231_030 Hb_007044_060--Hb_000072_080 Hb_007044_060--Hb_001287_030 Hb_005463_040 Hb_005463_040 Hb_001287_030--Hb_005463_040 Hb_000732_130 Hb_000732_130 Hb_001287_030--Hb_000732_130 Hb_001292_020 Hb_001292_020 Hb_001287_030--Hb_001292_020 Hb_008221_140 Hb_008221_140 Hb_001287_030--Hb_008221_140 Hb_004586_170 Hb_004586_170 Hb_001287_030--Hb_004586_170 Hb_000019_060 Hb_000019_060 Hb_019654_090--Hb_000019_060 Hb_002056_060 Hb_002056_060 Hb_019654_090--Hb_002056_060 Hb_019654_090--Hb_000072_080 Hb_007645_080 Hb_007645_080 Hb_019654_090--Hb_007645_080 Hb_004951_040 Hb_004951_040 Hb_019654_090--Hb_004951_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.67159 2.33924 1.75872 1.07231 3.02453 2.87255
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.5328 10.7383 8.20466 2.81477 1.32011

CAGE analysis