Hb_034406_030

Information

Type -
Description -
Location Contig34406: 24491-37550
Sequence    

Annotation

kegg
ID mus:103977309
description dihydroorotate dehydrogenase (quinone), mitochondrial
nr
ID XP_009391071.1
description PREDICTED: dihydroorotate dehydrogenase (quinone), mitochondrial [Musa acuminata subsp. malaccensis]
swissprot
ID P32746
description Dihydroorotate dehydrogenase (quinone), mitochondrial OS=Arabidopsis thaliana GN=PYRD PE=1 SV=2
trembl
ID M0SAI1
description Dihydroorotate dehydrogenase (quinone), mitochondrial OS=Musa acuminata subsp. malaccensis PE=3 SV=1
Gene Ontology
ID GO:0005739
description dihydroorotate dehydrogenase mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35934: 24429-37486 , PASA_asmbl_35935: 26550-37297
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_034406_030 0.0 - - PREDICTED: dihydroorotate dehydrogenase (quinone), mitochondrial [Musa acuminata subsp. malaccensis]
2 Hb_000069_420 0.0717754498 - - Beclin-1, putative [Ricinus communis]
3 Hb_001663_050 0.0738301513 - - PREDICTED: GPN-loop GTPase 3 [Jatropha curcas]
4 Hb_003994_260 0.0788683686 - - PREDICTED: uncharacterized protein LOC105646151 [Jatropha curcas]
5 Hb_001902_140 0.0805513758 - - PREDICTED: uncharacterized protein LOC105648457 isoform X2 [Jatropha curcas]
6 Hb_003787_010 0.0807485314 - - PREDICTED: 40S ribosomal protein S3-3-like [Phoenix dactylifera]
7 Hb_007416_320 0.0854635271 - - conserved hypothetical protein [Ricinus communis]
8 Hb_065525_090 0.0855932389 - - PREDICTED: CASP-like protein 4C1 [Vitis vinifera]
9 Hb_000258_260 0.0858461536 - - PREDICTED: protein HGH1 homolog [Jatropha curcas]
10 Hb_002061_040 0.0876321493 - - PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
11 Hb_086639_030 0.0894220168 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
12 Hb_001545_170 0.0896047077 - - PREDICTED: cleavage stimulating factor 64 isoform X1 [Jatropha curcas]
13 Hb_018124_010 0.0906480563 - - PREDICTED: mitochondrial uncoupling protein 1 isoform X2 [Jatropha curcas]
14 Hb_000217_030 0.0915423136 - - Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1 [Theobroma cacao]
15 Hb_003050_220 0.0929981664 - - hypothetical protein JCGZ_04601 [Jatropha curcas]
16 Hb_005846_040 0.0947734441 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 [Populus euphratica]
17 Hb_002660_070 0.0950001916 - - PREDICTED: gamma carbonic anhydrase 1, mitochondrial [Eucalyptus grandis]
18 Hb_006615_020 0.0952092643 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM2 [Jatropha curcas]
19 Hb_001226_040 0.0952105663 - - protein with unknown function [Ricinus communis]
20 Hb_004767_080 0.0953478653 - - PREDICTED: mitochondrial ATPase complex subunit ATP10 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_034406_030 Hb_034406_030 Hb_000069_420 Hb_000069_420 Hb_034406_030--Hb_000069_420 Hb_001663_050 Hb_001663_050 Hb_034406_030--Hb_001663_050 Hb_003994_260 Hb_003994_260 Hb_034406_030--Hb_003994_260 Hb_001902_140 Hb_001902_140 Hb_034406_030--Hb_001902_140 Hb_003787_010 Hb_003787_010 Hb_034406_030--Hb_003787_010 Hb_007416_320 Hb_007416_320 Hb_034406_030--Hb_007416_320 Hb_004994_140 Hb_004994_140 Hb_000069_420--Hb_004994_140 Hb_000069_420--Hb_003994_260 Hb_004324_090 Hb_004324_090 Hb_000069_420--Hb_004324_090 Hb_005846_040 Hb_005846_040 Hb_000069_420--Hb_005846_040 Hb_000250_060 Hb_000250_060 Hb_000069_420--Hb_000250_060 Hb_001633_210 Hb_001633_210 Hb_000069_420--Hb_001633_210 Hb_086639_030 Hb_086639_030 Hb_001663_050--Hb_086639_030 Hb_012114_040 Hb_012114_040 Hb_001663_050--Hb_012114_040 Hb_032208_060 Hb_032208_060 Hb_001663_050--Hb_032208_060 Hb_001663_050--Hb_007416_320 Hb_005568_120 Hb_005568_120 Hb_001663_050--Hb_005568_120 Hb_000483_260 Hb_000483_260 Hb_003994_260--Hb_000483_260 Hb_000258_260 Hb_000258_260 Hb_003994_260--Hb_000258_260 Hb_010812_120 Hb_010812_120 Hb_003994_260--Hb_010812_120 Hb_003994_260--Hb_004324_090 Hb_000603_080 Hb_000603_080 Hb_003994_260--Hb_000603_080 Hb_000703_350 Hb_000703_350 Hb_001902_140--Hb_000703_350 Hb_003050_220 Hb_003050_220 Hb_001902_140--Hb_003050_220 Hb_006420_080 Hb_006420_080 Hb_001902_140--Hb_006420_080 Hb_032202_190 Hb_032202_190 Hb_001902_140--Hb_032202_190 Hb_000684_470 Hb_000684_470 Hb_001902_140--Hb_000684_470 Hb_005463_100 Hb_005463_100 Hb_001902_140--Hb_005463_100 Hb_000217_030 Hb_000217_030 Hb_003787_010--Hb_000217_030 Hb_002995_020 Hb_002995_020 Hb_003787_010--Hb_002995_020 Hb_172426_040 Hb_172426_040 Hb_003787_010--Hb_172426_040 Hb_003787_010--Hb_005846_040 Hb_000020_060 Hb_000020_060 Hb_003787_010--Hb_000020_060 Hb_015279_010 Hb_015279_010 Hb_003787_010--Hb_015279_010 Hb_005618_170 Hb_005618_170 Hb_007416_320--Hb_005618_170 Hb_007416_320--Hb_001633_210 Hb_000058_060 Hb_000058_060 Hb_007416_320--Hb_000058_060 Hb_000062_220 Hb_000062_220 Hb_007416_320--Hb_000062_220 Hb_000876_070 Hb_000876_070 Hb_007416_320--Hb_000876_070 Hb_000120_470 Hb_000120_470 Hb_007416_320--Hb_000120_470
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.52852 1.85297 1.52501 1.87522 1.37414 1.48038
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.83503 4.52141 3.73326 3.08027 1.58194

CAGE analysis